Zafar-Lab / MargaretLinks
Metric learning-based graph-partitioned trajectory inference from single-cell data
☆11Updated 2 years ago
Alternatives and similar repositories for Margaret
Users that are interested in Margaret are comparing it to the libraries listed below
Sorting:
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- R package IReNA☆29Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last week
- Gene Set + S2G strategy annotations analyzed for disease architecture☆59Updated 3 years ago
- ☆14Updated 10 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆20Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- ☆23Updated 2 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆28Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Updated 4 years ago
- ☆63Updated 2 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- ☆40Updated 5 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago
- R package for generalized binary covariance decomposition.☆14Updated 6 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 4 months ago
- ☆62Updated 2 months ago
- Ordering gene-expression and functional events in single-cell experiments☆29Updated this week
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- ☆11Updated last year
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆30Updated 2 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Updated 3 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- ☆23Updated 7 months ago
- Neural Crest Fate Decisions☆11Updated 6 years ago