Zafar-Lab / MargaretLinks
Metric learning-based graph-partitioned trajectory inference from single-cell data
☆11Updated 2 years ago
Alternatives and similar repositories for Margaret
Users that are interested in Margaret are comparing it to the libraries listed below
Sorting:
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- R package IReNA☆28Updated 11 months ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated 2 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆18Updated 2 years ago
- The scripts used for the analyses in TOME project☆25Updated 10 months ago
- ☆13Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆38Updated last month
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 10 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 3 weeks ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Updated 3 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- ☆32Updated 8 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆38Updated 4 years ago
- ☆26Updated 4 years ago
- ☆20Updated this week
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆41Updated last year
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆61Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆22Updated 3 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- ☆38Updated 3 months ago
- ☆39Updated 4 years ago
- ☆51Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆55Updated 2 years ago
- scVI extension for unspliced RNA☆16Updated 4 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Updated 3 years ago