A python port of the R package SCTransform:
☆21Jul 10, 2021Updated 5 years ago
Alternatives and similar repositories for SCTransformPy
Users that are interested in SCTransformPy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GraphPart, a data partitioning method for ML on biological sequences☆36Oct 26, 2023Updated 2 years ago
- Annotated multivariate observation data in R☆53Apr 1, 2026Updated 6 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Python implementation of Monocle☆38Aug 21, 2025Updated last year
- ☆49Jan 11, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34May 19, 2026Updated 4 months ago
- The official repository for the ARSENAL model☆20Jul 3, 2026Updated 3 months ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆17Oct 16, 2025Updated 11 months ago
- Implementation of AlphaGenome, Deepmind's updated genomic attention model☆15Feb 4, 2026Updated 8 months ago
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Python package to perform normalization and variance-stabilization of single-cell data☆29Jul 17, 2025Updated last year
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Matplotlib style for scientific publications☆15Updated this week
- Store collections of experimental data based on TileDB☆11Sep 28, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆14Jan 23, 2025Updated last year
- Formation continue sur la FAIRisation du code informatique☆10Jun 15, 2022Updated 4 years ago
- ☆13Jul 5, 2019Updated 7 years ago
- ☆35Oct 2, 2026Updated last week
- Vaeda method for computational doublet annotation☆21Feb 1, 2026Updated 8 months ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆39Sep 29, 2026Updated last week
- Acquiring images from allen brain atlas, mouse ISH experiments in R.☆17Mar 20, 2024Updated 2 years ago
- A Python wrapper for the bioRxiv API.☆11Aug 18, 2021Updated 5 years ago
- ☆12Feb 6, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆65Feb 1, 2021Updated 5 years ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆156Sep 27, 2026Updated last week
- Code for pmVAE model, seen in ICML CompBio '21☆12Apr 12, 2024Updated 2 years ago
- ☆17Nov 3, 2023Updated 2 years ago
- Genomic sequence preprocessing toolkit☆14Sep 26, 2026Updated last week
- A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.☆20Mar 11, 2026Updated 6 months ago
- ☆52Sep 30, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Robust and scalable single-cell signature scoring☆29Sep 22, 2026Updated 2 weeks ago
- Differential spatial enrichment across conditions☆30Jul 14, 2026Updated 2 months ago
- Tutorials for learning scverse☆22Sep 28, 2026Updated last week
- Seqscope codes☆11Nov 28, 2021Updated 4 years ago
- Leveraging Digital Pathology Foundation Models to characterize the tumor microenvironment (TME)☆38Sep 29, 2026Updated last week
- [ECCV 2024] Code for the paper "Mew: Multiplexed Immunofluorescence Image Analysis through an Efficient Multiplex Network"☆16Jul 27, 2024Updated 2 years ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Jul 24, 2026Updated 2 months ago