martaint / InterCellar
☆9Updated 2 years ago
Alternatives and similar repositories for InterCellar:
Users that are interested in InterCellar are comparing it to the libraries listed below
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 4 months ago
- ☆29Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- ☆24Updated last year
- R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)☆16Updated last month
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- ☆21Updated 4 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated last year
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆29Updated 8 months ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆19Updated 2 years ago
- A database of useful gene signatures for single-cell analysis☆20Updated 11 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- CellAnn☆12Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆15Updated 5 months ago
- ☆12Updated 9 months ago
- ☆16Updated 4 months ago
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated last month
- An R package for visualising cell-cell interactions☆43Updated 6 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆21Updated 3 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆33Updated 4 years ago
- Hierarchical classification of cells☆23Updated 7 months ago
- Tools for assessing clustering robustness☆23Updated 2 weeks ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago