martaint / InterCellarLinks
☆10Updated 3 years ago
Alternatives and similar repositories for InterCellar
Users that are interested in InterCellar are comparing it to the libraries listed below
Sorting:
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 11 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Updated 5 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- Landscape Single Cell Entropy☆20Updated 5 years ago
- ☆27Updated 3 years ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- An R package for visualising cell-cell interactions☆43Updated last year
- Overview of the scripts used to analyse the brainimmuneatlas data☆19Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- ☆29Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Hierarchical Cell Annotation☆26Updated 10 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆37Updated 6 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆20Updated last month
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated last month
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆38Updated this week
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Querying cellular states and programs by learning representations of gene sets☆14Updated last week
- Compute the neighborhood consolidation matrix and identify SHRs☆13Updated 3 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 7 months ago
- R package for Bioconductor submission☆37Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 3 months ago
- .h5mu files interface for Seurat☆31Updated last year
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago