A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
☆84Mar 27, 2026Updated 2 weeks ago
Alternatives and similar repositories for SOMA
Users that are interested in SOMA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆124Updated this week
- CZ CELLxGENE Discover Census☆119Jan 14, 2026Updated 2 months ago
- Shadow objects for AnnData and MuData (experimental)☆12Feb 28, 2025Updated last year
- Rust Bindings for TileDB [early wip]☆17Mar 18, 2026Updated 3 weeks ago
- Build contrasts for models defined with formulaic☆12Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.☆90Updated this week
- Python API and Jupyter widget for Vitessce☆65Updated this week
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- Hosted version of cellxgene☆22Updated this week
- Python interface to TileDB Cloud REST API☆15Mar 13, 2026Updated 3 weeks ago
- Distributed single-cell data analysis.☆39Apr 4, 2026Updated last week
- A performant scientific image visualization system.☆36Mar 20, 2026Updated 3 weeks ago
- Cookiecutter template for scverse☆90Updated this week
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated 8 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Code and documentation for the curation of cellxgene datasets☆54Updated this week
- Annotated multivariate observation data in R☆53Apr 1, 2026Updated last week
- machine-readable file format for genomic library sequence and structure☆128Apr 3, 2026Updated last week
- Multimodal Data (.h5mu) implementation for Python☆111Updated this week
- Convert between AnnData and SingleCellExperiment☆148Updated this week
- Batch balanced KNN☆179Oct 11, 2023Updated 2 years ago
- Access public biological ontologies.☆15Aug 7, 2024Updated last year
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- muon is a multimodal omics Python framework☆266Mar 16, 2026Updated 3 weeks ago
- Spatial Single Cell Analysis in Python☆560Updated this week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Mar 16, 2026Updated 3 weeks ago
- ☆13Apr 17, 2025Updated 11 months ago
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated 2 months ago
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆105Apr 1, 2026Updated last week
- SOMA PyTorch loaders☆14Sep 24, 2025Updated 6 months ago
- Identifying transcription factor binding sites from neural network contribution scores☆18Nov 8, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Flow & mass cytometry analytics.☆60Updated this week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 6 months ago
- ☆65May 21, 2025Updated 10 months ago
- Read RDS files, in Python☆27Updated this week
- ☆15Mar 27, 2026Updated 2 weeks ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,591Apr 3, 2026Updated last week
- Spark interface to the TileDB storage manager [please see README]☆17Dec 23, 2024Updated last year