single-cell-data / SOMALinks
A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
☆81Updated last week
Alternatives and similar repositories for SOMA
Users that are interested in SOMA are comparing it to the libraries listed below
Sorting:
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆118Updated last week
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆109Updated last month
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Multimodal Data (.h5mu) implementation for Python☆104Updated 2 weeks ago
- ☆22Updated 3 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 2 months ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 3 weeks ago
- Annotated multivariate observation data in R☆51Updated 6 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- Code and documentation for the curation of cellxgene datasets☆50Updated last week
- R API and htmlwidget for Vitessce☆44Updated 4 months ago
- ☆48Updated last week
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated 3 weeks ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆96Updated 2 weeks ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆94Updated last month
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆66Updated 3 weeks ago
- ☆59Updated 7 months ago
- An R package for performing cell typing in SMI and other single cell data☆45Updated 7 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Python implementation of the Loom file format - http://loompy.org☆148Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆56Updated 6 months ago
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆82Updated last month
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆50Updated last year
- Identification of spatial homogeneous regions☆21Updated 2 months ago
- Geometry-preserving random sampling☆95Updated last year
- CZ CELLxGENE Discover Census☆114Updated this week
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- Single Cell Epigenome-based Inference of Activity☆19Updated 2 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 4 months ago