single-cell-data / SOMALinks
A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
☆79Updated 5 months ago
Alternatives and similar repositories for SOMA
Users that are interested in SOMA are comparing it to the libraries listed below
Sorting:
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆115Updated last week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- Code and documentation for the curation of cellxgene datasets☆49Updated last week
- Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with mill…☆108Updated last week
- R API and htmlwidget for Vitessce☆43Updated 3 months ago
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆77Updated last week
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated last month
- ☆57Updated 5 months ago
- Multimodal Data (.h5mu) implementation for Python☆98Updated 2 weeks ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- An R package for performing cell typing in SMI and other single cell data☆43Updated 5 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆65Updated last week
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆78Updated 6 months ago
- ☆22Updated 3 years ago
- CZ CELLxGENE Discover Census☆113Updated last week
- Annotated multivariate observation data in R☆51Updated 5 months ago
- ☆45Updated this week
- Slides and Notebooks for scverse 2024☆17Updated last year
- AnnData interoperability in R☆122Updated this week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆32Updated last month
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆95Updated last week
- Fit generalized linear models in python.☆28Updated 2 years ago
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆70Updated this week
- Geometry-preserving random sampling☆93Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Tools to handle IMC data☆23Updated 3 years ago
- ☆42Updated last year
- Multi-omics factor analysis v2☆54Updated 3 weeks ago
- Spatial omics analysis and visualization library☆19Updated this week
- ☆29Updated last year