A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
☆85Jun 5, 2026Updated 3 weeks ago
Alternatives and similar repositories for SOMA
Users that are interested in SOMA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.☆127May 25, 2026Updated last month
- CZ CELLxGENE Discover Census☆128Updated this week
- Shadow objects for AnnData and MuData (experimental)☆11Feb 28, 2025Updated last year
- Rust Bindings for TileDB [early wip]☆19Mar 18, 2026Updated 3 months ago
- Build contrasts for models defined with formulaic☆13Jun 22, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.☆91Updated this week
- data and model repository for single-cell data☆136Dec 21, 2023Updated 2 years ago
- Hosted version of cellxgene☆20Updated this week
- Python API and Jupyter widget for Vitessce☆67Jun 10, 2026Updated 2 weeks ago
- Python interface to TileDB Cloud REST API☆15May 5, 2026Updated last month
- Distributed single-cell data analysis.☆39Updated this week
- A performant scientific image visualization system.☆36Updated this week
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count …☆85Jun 17, 2026Updated last week
- Cookiecutter template for scverse☆89Jun 23, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated 11 months ago
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- Code and documentation for the curation of cellxgene datasets☆57Jun 23, 2026Updated last week
- Annotated multivariate observation data in R☆53Apr 1, 2026Updated 2 months ago
- machine-readable file format for genomic library sequence and structure☆130Jun 19, 2026Updated last week
- Multimodal Data (.h5mu) implementation for Python☆123Jun 22, 2026Updated last week
- Batch balanced KNN☆178Oct 11, 2023Updated 2 years ago
- Convert between AnnData and SingleCellExperiment☆151Jun 23, 2026Updated last week
- code for composite in situ imaging (cisi) analysis☆12Oct 26, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Access public biological ontologies.☆14Aug 7, 2024Updated last year
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Spatial Single Cell Analysis in Python☆578Updated this week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34May 19, 2026Updated last month
- muon is a multimodal omics Python framework☆272Jun 22, 2026Updated last week
- ☆14Apr 17, 2025Updated last year
- Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)☆11Feb 2, 2026Updated 4 months ago
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆109May 6, 2026Updated last month
- SOMA PyTorch loaders☆14Sep 24, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Identifying transcription factor binding sites from neural network contribution scores☆21Nov 8, 2025Updated 7 months ago
- Flow & mass cytometry analytics.☆60Jun 22, 2026Updated last week
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 9 months ago
- Read and Write RDS files, in Python☆28Updated this week
- ☆67May 17, 2026Updated last month
- ☆15Apr 7, 2026Updated 2 months ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,649Updated this week