slowkow / harmonypyLinks
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
☆221Updated last year
Alternatives and similar repositories for harmonypy
Users that are interested in harmonypy are comparing it to the libraries listed below
Sorting:
- Python package to perform enrichment analysis from omics data.☆212Updated this week
- Perturbation Analysis in the scverse ecosystem.☆185Updated last week
- A novel machine learning pipeline to analyse spatial transcriptomics data☆224Updated last week
- Batch balanced KNN☆165Updated last year
- LIANA+: an all-in-one framework for cell-cell communication☆219Updated last week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆144Updated 7 months ago
- muon is a multimodal omics Python framework☆239Updated 4 months ago
- Benchmarking analysis of data integration tools☆363Updated 6 months ago
- Reference mapping for single-cell genomics☆374Updated last month
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆201Updated 2 weeks ago
- Scanpy Tutorials.☆218Updated this week
- Differential expression analysis for single-cell RNA-seq data.☆199Updated 4 months ago
- CellRank: dynamics from multi-view single-cell data☆390Updated 3 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆365Updated 3 weeks ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆161Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.☆234Updated last week
- Multi-omic single-cell optimal transport tools☆164Updated last week
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆133Updated 2 years ago
- Test genes for Spatial Variation☆172Updated last year
- A tool for semi-automatic cell type classification☆387Updated 2 weeks ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆223Updated 5 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAms☆171Updated 11 months ago
- Panoramic stitching of single cell data☆285Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆62Updated last week
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆219Updated this week
- CZ CELLxGENE Discover Census☆104Updated last week
- Single cell trajectory detection☆254Updated 2 weeks ago
- Detect doublets in single-cell RNA-seq data☆154Updated 4 years ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆207Updated last year
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆347Updated 4 months ago