slowkow / harmonypyLinks
πΌ Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
β234Updated last year
Alternatives and similar repositories for harmonypy
Users that are interested in harmonypy are comparing it to the libraries listed below
Sorting:
- Single-cell perturbation analysisβ203Updated last week
- Python package to perform enrichment analysis from omics data.β226Updated this week
- LIANA+: an all-in-one framework for cell-cell communicationβ238Updated last week
- A novel machine learning pipeline to analyse spatial transcriptomics dataβ229Updated 3 weeks ago
- Batch balanced KNNβ172Updated 2 years ago
- Benchmarking analysis of data integration toolsβ384Updated 3 weeks ago
- Reference mapping for single-cell genomicsβ383Updated last week
- muon is a multimodal omics Python frameworkβ248Updated this week
- Episcanpy: Epigenomics Single Cell Analysis in Pythonβ147Updated 10 months ago
- Scanpy Tutorials.β225Updated this week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to reprβ¦β218Updated 3 months ago
- Multi-omic single-cell optimal transport toolsβ174Updated this week
- Differential expression analysis for single-cell RNA-seq data.β204Updated 7 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.β227Updated 5 years ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.β141Updated 2 years ago
- Single cell perturbation predictionβ318Updated 10 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)β381Updated this week
- CellRank: dynamics from multi-view single-cell dataβ397Updated last month
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq dataβ375Updated last month
- A scanpy extension to analyse single-cell TCR and BCR data.β239Updated this week
- data and model repository for single-cell dataβ135Updated last year
- Models and datasets for perturbational single-cell omicsβ164Updated 3 years ago
- Supervised Pathway DEConvolution of InTerpretable Gene ProgRAmsβ175Updated last year
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.β170Updated last week
- Single cell trajectory detectionβ268Updated 3 months ago
- Accelerated, Python-only, single-cell integration benchmarking metricsβ72Updated this week
- This is the alpha version of the CellOracle packageβ383Updated 9 months ago
- A tool for semi-automatic cell type classificationβ412Updated this week
- Test genes for Spatial Variationβ176Updated last year
- Spatial alignment of single cell transcriptomic data.β325Updated 3 months ago