shenorrLabTRDF / cellAlign
☆41Updated 4 years ago
Alternatives and similar repositories for cellAlign:
Users that are interested in cellAlign are comparing it to the libraries listed below
- Clone identification from single-cell data☆61Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆37Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆39Updated 2 years ago
- ☆38Updated 3 weeks ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- An r package that works as a wrapper to homologene☆45Updated last year
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- scWGCNA☆59Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- ☆29Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated last week
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 10 months ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated last month
- Gene regulatory network containing signed transcription factor-target gene interactions☆74Updated 11 months ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆48Updated 3 years ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 7 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆28Updated 6 years ago
- Explore and share your scRNAseq clustering results☆50Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆41Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago