☆46Jan 9, 2021Updated 5 years ago
Alternatives and similar repositories for cellAlign
Users that are interested in cellAlign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"☆23Feb 14, 2021Updated 5 years ago
- ☆15Jan 16, 2024Updated 2 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- ☆19Mar 31, 2023Updated 3 years ago
- BioCarta pathway images☆11Jan 30, 2026Updated 5 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An R package to calculate Dynamical Network Biomarkers (DNB).☆11Sep 16, 2022Updated 3 years ago
- The GEO Cancer Analysis Suite (GCAS) is a versatile R package designed for analyzing and visualizing gene expression data in cancer resea…☆22Jun 26, 2026Updated 3 weeks ago
- Metric learning-based graph-partitioned trajectory inference from single-cell data☆12Apr 28, 2023Updated 3 years ago
- R package for integrating and comparing multiple single cell genomic datasets☆12Dec 27, 2020Updated 5 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆184Dec 18, 2021Updated 4 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆66Mar 31, 2022Updated 4 years ago
- ☆15Feb 12, 2026Updated 5 months ago
- Scripts from the GBM cellular states paper☆21Feb 24, 2021Updated 5 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆55Aug 1, 2024Updated last year
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- Code & documentation for Multiomics and deep learning dissect regulatory syntax in human development (Liu*, Jessa*, Kim*, Ng*, et al, Nat…☆29Updated this week
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Jul 23, 2021Updated 4 years ago
- ☆35Oct 4, 2024Updated last year
- ☆13Apr 14, 2026Updated 3 months ago
- Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo☆21Jan 28, 2025Updated last year
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆73Apr 12, 2024Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆182Jun 10, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆12Mar 5, 2024Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 5 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆443Apr 28, 2026Updated 2 months ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆148Jul 19, 2021Updated 5 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆312Mar 6, 2023Updated 3 years ago
- Functional Inference of Gene Regulation☆54Jul 5, 2024Updated 2 years ago
- SLICER algorithm for inferring cell trajectories. See details in Welch et al., Genome Biology 2016: http://genomebiology.biomedcentral.co…☆16Oct 17, 2017Updated 8 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 5 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆89Aug 10, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19May 30, 2022Updated 4 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- A R package for advanced single cell data viz☆75Aug 29, 2025Updated 10 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34May 19, 2026Updated 2 months ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago
- ☆128Sep 4, 2025Updated 10 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆31Oct 24, 2024Updated last year