shenorrLabTRDF / cellAlign
☆38Updated 4 years ago
Alternatives and similar repositories for cellAlign:
Users that are interested in cellAlign are comparing it to the libraries listed below
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 7 months ago
- Clone identification from single-cell data☆61Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- ☆29Updated last year
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆44Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- An r package that works as a wrapper to homologene☆42Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- ☆28Updated 6 years ago
- scWGCNA☆57Updated 2 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 8 months ago
- ☆39Updated 3 years ago
- R package for specialised analysis of single cell data☆37Updated 2 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- ☆53Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆72Updated 4 years ago
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆20Updated 2 years ago
- Clone of the Bioconductor repository for the scran package.☆41Updated 5 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆28Updated 8 months ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated 11 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆47Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago