Interactive visualization of spatial omics data
☆91Sep 8, 2026Updated last month
Alternatives and similar repositories for napari-spatialdata
Users that are interested in napari-spatialdata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Static plotting for spatialdata☆89Oct 19, 2026Updated last week
- An open and interoperable data framework for spatial omics data☆404Updated this week
- ☆67Sep 9, 2026Updated last month
- ☆108Updated this week
- Single-cell spatial omics analysis that makes you happy!☆79Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automated batch processing of tissue microscopy image data with a text-based interface☆10Mar 24, 2026Updated 7 months ago
- Python API and Jupyter widget for Vitessce☆67Sep 22, 2026Updated last month
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Nov 16, 2025Updated 11 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆45Aug 8, 2025Updated last year
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 11 months ago
- A BioIO reader plugin for reading Zarr files in the OME format.☆14Sep 8, 2026Updated last month
- ☆20Sep 17, 2026Updated last month
- Spatial Single Cell Analysis in Python☆612Updated this week
- Automated batch processing of cell and tissue microscopy image data in Napari☆23Oct 21, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆30Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Updated this week
- A napari plugin to view and edit layer metadata☆14Oct 21, 2026Updated last week
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆135Oct 22, 2026Updated last week
- InstanSeg is a pytorch-based cell and nucleus segmentation pipeline for fluorescence and brightfield microscopy images.☆249Sep 29, 2026Updated last month
- ☆42Oct 18, 2026Updated last week
- scVIVA-Tools: A unified toolkit for spatial transcriptomics analysis☆15Oct 21, 2026Updated last week
- An introduction to OME-Zarr for big bioimaging data☆28Oct 1, 2026Updated 3 weeks ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆296Oct 23, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆273Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆84Updated this week
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 3 years ago
- ☆15Updated this week
- Public landing page and releases for CellTune.☆12Jul 13, 2026Updated 3 months ago
- Links between modalities in mudata☆17Oct 16, 2026Updated 2 weeks ago
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆53Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆178Updated this week
- Linking napari layers with Matplotlib plots☆47Jul 1, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tiled processing of arbitrarily large images — any image, any function.☆18Oct 22, 2026Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Aug 28, 2026Updated 2 months ago
- A GPU-accelerated web application for visualization, annotation and sharing of spatial biology data☆14Updated this week
- Multimodal Data (.h5mu) implementation for Python☆134Updated this week
- Block-wise operations for large nD volumes☆45Updated this week
- Morphological features from images and masks made easy.☆53Oct 23, 2026Updated last week
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated 3 months ago