Single-cell epigenomics analysis tools
☆324Aug 4, 2026Updated last week
Alternatives and similar repositories for SnapATAC2
Users that are interested in SnapATAC2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- muon is a multimodal omics Python framework☆278Aug 3, 2026Updated last week
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆12Updated this week
- Universal Single-Cell Genomics Preprocessing package☆51Jul 29, 2026Updated last week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆462Feb 18, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for semi-automatic cell type classification☆500May 22, 2026Updated 2 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆262Jan 16, 2026Updated 6 months ago
- ☆39Sep 5, 2024Updated last year
- CellRank: dynamics from multi-view single-cell data☆454Aug 3, 2026Updated last week
- Graph-linked unified embedding for single-cell multi-omics data integration☆474Feb 9, 2026Updated 6 months ago
- This is the alpha version of the CellOracle package☆480Apr 30, 2026Updated 3 months ago
- Paired-seq☆15Jul 17, 2024Updated 2 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,675Updated this week
- Whole mouse brain snATAC seq analysis☆29Apr 18, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Multimodal Data (.h5mu) implementation for Python☆129Updated this week
- Benchmarking computational single cell ATAC-seq methods☆185Nov 30, 2020Updated 5 years ago
- ☆27Apr 15, 2025Updated last year
- LIANA+: an all-in-one framework for cell-cell communication☆310Jul 16, 2026Updated 3 weeks ago
- Multi-omic velocity inference☆120Oct 23, 2024Updated last year
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆34Jan 3, 2023Updated 3 years ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 5 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆194Mar 27, 2025Updated last year
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34May 19, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated last month
- Single-cell analysis in Python. Scales to >100M cells.☆2,539Updated this week
- Python package to perform enrichment analysis from omics data.☆288Aug 3, 2026Updated last week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆479Jun 6, 2025Updated last year
- Bead-based single-cell atac processing☆33Jul 6, 2026Updated last month
- Benchmarking analysis of data integration tools☆426Apr 27, 2026Updated 3 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆128Apr 20, 2026Updated 3 months ago
- R toolkit for the analysis of single-cell chromatin data☆424Updated this week
- Python implementation of Milo for differential abundance testing on KNN graph☆85Feb 17, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- Episcanpy: Epigenomics Single Cell Analysis in Python☆152Dec 5, 2024Updated last year
- Multiome GRN inference.☆141Apr 10, 2026Updated 4 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆410Jun 16, 2026Updated last month
- Context specific and dynamic gene regulatory network reconstruction and analysis☆129Aug 3, 2026Updated last week
- ☆51Jul 22, 2026Updated 2 weeks ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆35May 23, 2026Updated 2 months ago