scverse / SnapATAC2Links
Single-cell epigenomics analysis tools
☆278Updated 3 weeks ago
Alternatives and similar repositories for SnapATAC2
Users that are interested in SnapATAC2 are comparing it to the libraries listed below
Sorting:
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆231Updated 6 months ago
- A tool for detecting somatic variants in single cell data☆211Updated 10 months ago
- A package to help convert different single-cell data formats to each other☆434Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆200Updated 5 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆345Updated last week
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- Clustering scRNAseq by genotypes☆187Updated 8 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆208Updated last year
- Detect doublets in single-cell RNA-seq data☆155Updated 4 years ago
- A tool for semi-automatic cell type classification☆394Updated last month
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆162Updated 2 years ago
- ☆247Updated last year
- Single-cell Transcriptome and Regulome Analysis Pipeline☆285Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆289Updated 2 years ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆163Updated this week
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆165Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆382Updated 2 weeks ago
- ☆167Updated 10 months ago
- This is the alpha version of the CellOracle package☆372Updated 6 months ago
- ☆271Updated 8 months ago
- Scanpy Tutorials.☆219Updated last week
- A toolkit of spatial transcriptomic analysis.☆257Updated last month
- Panoramic stitching of single cell data☆286Updated 3 weeks ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆175Updated 3 weeks ago
- TCR and BCR assembly from RNA-seq data☆320Updated 3 weeks ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆230Updated 2 years ago
- scATAC-seq data analysis tools and papers☆112Updated last month
- Test genes for Spatial Variation☆174Updated last year
- my notes for scATACseq analysis☆128Updated last year