scverse / SnapATAC2Links
Single-cell epigenomics analysis tools
☆289Updated last month
Alternatives and similar repositories for SnapATAC2
Users that are interested in SnapATAC2 are comparing it to the libraries listed below
Sorting:
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆234Updated 8 months ago
- A tool for detecting somatic variants in single cell data☆214Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆204Updated 7 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆358Updated 2 months ago
- A tool for semi-automatic cell type classification☆408Updated this week
- A package to help convert different single-cell data formats to each other☆442Updated last year
- Detect doublets in single-cell RNA-seq data☆157Updated 4 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆296Updated 2 years ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆319Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆213Updated last year
- Scanpy Tutorials.☆223Updated last week
- ☆274Updated 10 months ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆170Updated last week
- LIANA+: an all-in-one framework for cell-cell communication☆238Updated this week
- ☆254Updated last year
- A toolkit of spatial transcriptomic analysis.☆261Updated 3 weeks ago
- Clustering scRNAseq by genotypes☆189Updated 10 months ago
- TCR and BCR assembly from RNA-seq data☆326Updated this week
- This is the alpha version of the CellOracle package☆382Updated 9 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆166Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆148Updated 3 years ago
- Python package to perform enrichment analysis from omics data.☆225Updated last week
- reticulate-free single cell format conversion☆187Updated 2 weeks ago
- ☆172Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆168Updated last year
- Single-cell Transcriptome and Regulome Analysis Pipeline☆293Updated 2 years ago
- Panoramic stitching of single cell data☆289Updated 2 months ago
- Test genes for Spatial Variation☆176Updated last year
- scATAC-seq data analysis tools and papers☆122Updated 3 months ago