scverse / SnapATAC2Links
Single-cell epigenomics analysis tools
☆298Updated this week
Alternatives and similar repositories for SnapATAC2
Users that are interested in SnapATAC2 are comparing it to the libraries listed below
Sorting:
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆239Updated 9 months ago
- A tool for semi-automatic cell type classification☆425Updated this week
- A package to help convert different single-cell data formats to each other☆445Updated last year
- A tool for detecting somatic variants in single cell data☆215Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆365Updated 3 months ago
- Detect doublets in single-cell RNA-seq data☆158Updated 4 years ago
- ☆276Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆204Updated 3 weeks ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆218Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆297Updated 3 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆294Updated 2 years ago
- TCR and BCR assembly from RNA-seq data☆330Updated this week
- LIANA+: an all-in-one framework for cell-cell communication☆245Updated this week
- Scanpy Tutorials.☆228Updated last week
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆178Updated last week
- Panoramic stitching of single cell data☆292Updated 4 months ago
- ☆255Updated last month
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆409Updated 4 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆168Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆150Updated 3 years ago
- This is the alpha version of the CellOracle package☆397Updated 10 months ago
- reticulate-free single cell format conversion☆193Updated last month
- ☆175Updated last year
- scATAC-seq data analysis tools and papers☆124Updated 4 months ago
- Python package to perform enrichment analysis from omics data.☆238Updated last week
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- A toolkit of spatial transcriptomic analysis.☆266Updated this week
- ☆360Updated 3 years ago