SingleR-inc / singler-pyLinks
Python bindings for SingleR
☆12Updated 6 months ago
Alternatives and similar repositories for singler-py
Users that are interested in singler-py are comparing it to the libraries listed below
Sorting:
- Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases☆45Updated last week
- Interactive visualisation of CellphoneDB results☆11Updated 10 months ago
- ☆44Updated last year
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆81Updated last week
- ☆16Updated 3 months ago
- R API and htmlwidget for Vitessce☆44Updated 3 months ago
- ☆23Updated 2 months ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆18Updated 6 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- Code used for muti cellular factor analysis☆14Updated last year
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated this week
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Updated 11 months ago
- A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping☆27Updated 5 months ago
- Single cell type annotation guided by cell atlases, with freedom to be queer☆25Updated 3 years ago
- Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data☆13Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆56Updated last year
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆37Updated 2 weeks ago
- ☆33Updated 8 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆33Updated last month
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- ☆37Updated 9 months ago
- COMET Single-Cell Marker Detection tool☆31Updated 3 years ago
- Builds a PEP from SRA or GEO accessions☆53Updated this week
- ☆43Updated last month
- Single cell analysis in Javascript☆22Updated last week
- Analyzing cellular niches in spatial transcriptomics data☆33Updated last year
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 6 years ago
- ☆12Updated last year