Alternatives and similar repositories for singler-py

Users that are interested in singler-py are comparing it to the libraries listed below

• korsunskylab / tessera
  ☆14Updated last month
• HCA-integration / scAtlasTb
  Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
  ☆40Updated this week
• ventolab / cellphonedbviz
  Interactive visualisation of CellphoneDB results
  ☆10Updated 9 months ago
• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆77Updated 3 weeks ago
• cellatlas / human
  ☆44Updated 11 months ago
• Teichlab / sctk
  ☆41Updated 2 months ago
• const-ae / pyLemur
  A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.
  ☆26Updated 9 months ago
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆43Updated 2 months ago
• saezlab / MOFAcell
  Code used for muti cellular factor analysis
  ☆14Updated last year
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆55Updated last year
• FredPont / spatial
  Single-Cell Spatial Explorer
  ☆15Updated last year
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 3 years ago
• satijalab / panhumanpy
  ☆20Updated 3 weeks ago
• dynverse / anndata
  Annotated multivariate observation data in R
  ☆50Updated 4 months ago
• interactivereport / ScaleSC
  ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167
  ☆37Updated 2 months ago
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• SONGDONGYUAN1994 / ClusterDE
  A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping
  ☆27Updated 3 months ago
• kanaverse / scran.js
  Single cell analysis in Javascript
  ☆22Updated 2 months ago
• antigenomics / vdjmatch
  ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
  ☆39Updated 6 years ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆31Updated last year
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆35Updated 3 weeks ago
• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆31Updated 2 weeks ago
• pachterlab / SpatialFeatureExperiment
  Extension of SpatialExperiment with sf
  ☆55Updated 3 weeks ago
• 10XGenomics / enclone
  VDJ Clonotyping & Analysis Tools
  ☆49Updated 7 months ago
• ajaynadig / TRADEtools
  ☆31Updated 7 months ago
• HCBravoLab / scTreeViz
  R/Bioconductor package to interactively explore single cell clusters at multiple resolutions
  ☆10Updated 3 years ago
• scverse / genomic-features
  Genomic Features in Python from BioConductor's AnnotationHub
  ☆22Updated this week
• limin321 / stmut
  Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data
  ☆13Updated 11 months ago
• bioinfoDZ / scDAPP
  A end-to-end scRNA-seq analysis pipeline for cross-group comparison
  ☆18Updated 5 months ago