Python bindings for SingleR
☆15Jan 6, 2026Updated 2 months ago
Alternatives and similar repositories for singler-py
Users that are interested in singler-py are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Quick pre-QC knee plots for barcode based scRNAseq data☆12Dec 8, 2018Updated 7 years ago
- singleCellNet in Python☆15Feb 25, 2026Updated 3 weeks ago
- A toolbox for sparse contrastive principal component analysis☆12Feb 10, 2025Updated last year
- scType rewritten in python☆25Nov 7, 2024Updated last year
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- ☆16Jan 6, 2025Updated last year
- Hierarchical Cell Annotation☆27Nov 17, 2024Updated last year
- This is a read-only mirror of the CRAN R package repository. forestploter — Create a Flexible Forest Plot. Homepage: https://github.com…☆12Apr 13, 2025Updated 11 months ago
- Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀☆95Nov 24, 2025Updated 4 months ago
- ☆17May 23, 2025Updated 10 months ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆33Dec 15, 2025Updated 3 months ago
- Scanner of specific spatial patterns in tissues☆14Jul 15, 2022Updated 3 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Build contrasts for models defined with formulaic☆12Updated this week
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆118Jan 22, 2024Updated 2 years ago
- Quantitative Trait Cluster Association Test in R☆26Apr 19, 2021Updated 4 years ago
- Access public biological ontologies.☆15Aug 7, 2024Updated last year
- ☆13Aug 14, 2020Updated 5 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Sep 12, 2017Updated 8 years ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Aug 3, 2023Updated 2 years ago
- A tool to compare two CSV files of SMILES strings, find overlapping compounds by InChIKey prefix, and generate an HTML visualization of …☆16Apr 20, 2025Updated 11 months ago
- ☆12May 11, 2016Updated 9 years ago
- Shadow objects for AnnData and MuData (experimental)☆12Feb 28, 2025Updated last year
- ☆20Jul 22, 2024Updated last year
- Single-cell analysis methods in Rust☆30Nov 4, 2025Updated 4 months ago
- SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.☆17Feb 23, 2025Updated last year
- code for paper: Identifiability Guarantees for Causal Disentanglement from Soft Interventions☆15Nov 27, 2023Updated 2 years ago
- AnnData interoperability in R☆164Updated this week
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆22Mar 17, 2026Updated last week
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆26Mar 16, 2026Updated last week
- A flexible and fast sgRNA counter from FASTQ Files☆11Dec 29, 2025Updated 2 months ago
- CLI tool that generates, compiles, and runs SwiftUI apps from natural language prompts via Claude Code.☆33Updated this week
- factor models for omics data☆36Mar 16, 2026Updated last week
- A ggplot extension for drawing smooth non-convex circles around a set of points.☆19May 20, 2024Updated last year
- ☆29Sep 4, 2023Updated 2 years ago
- ☆24Oct 1, 2025Updated 5 months ago
- A Collection of Platform, Tools, and Resources for Antibody Engineering☆21Jun 30, 2023Updated 2 years ago
- Fast protein backbone flexibility prediction model☆34Jan 4, 2026Updated 2 months ago
- ☆23May 31, 2022Updated 3 years ago