☆16May 25, 2021Updated 4 years ago
Alternatives and similar repositories for VeTra
Users that are interested in VeTra are comparing it to the libraries listed below
Sorting:
- ☆14Mar 8, 2024Updated last year
- TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.☆41Mar 18, 2022Updated 3 years ago
- Repository for the scLiTr (single-cell Lineage Tracing analysis) python package☆15Jan 22, 2026Updated last month
- SClineager: a Bayesian hierarchical model that performs lineage tracing of single cells based on genetic markers☆10Apr 30, 2024Updated last year
- ☆13Nov 3, 2023Updated 2 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Probabilistic single-cell pseudotime with Edward+Tensorflow☆12Oct 5, 2017Updated 8 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34Dec 11, 2025Updated 2 months ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".☆13Apr 25, 2022Updated 3 years ago
- ☆23Sep 29, 2025Updated 4 months ago
- ☆39Aug 4, 2021Updated 4 years ago
- This repository contains the source code for the tappAS application. See README for details.☆20Dec 18, 2025Updated 2 months ago
- Toolbox of the Human Neural Organoid Cell Atlas☆30Updated this week
- 🐶 hlabud: HLA genotype analysis in R☆17Apr 11, 2025Updated 10 months ago
- scType rewritten in python☆25Nov 7, 2024Updated last year
- A clusterability measure for scRNA-seq data.☆18Feb 2, 2022Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Apr 23, 2025Updated 10 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Nov 17, 2024Updated last year
- ☆20Mar 28, 2017Updated 8 years ago
- ☆20May 30, 2022Updated 3 years ago
- Analysis for BICCN cross-species primary motor cortex project☆23Feb 13, 2024Updated 2 years ago
- Micro DNA identification☆23Aug 5, 2021Updated 4 years ago
- RNA velocity validation☆22Mar 16, 2022Updated 3 years ago
- ☆22Jan 6, 2026Updated last month
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Nov 6, 2021Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Oct 17, 2024Updated last year
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆29May 19, 2017Updated 8 years ago
- scover☆24Nov 3, 2023Updated 2 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 5 years ago
- An R-based interface for loom files☆67Jul 9, 2020Updated 5 years ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Jul 10, 2015Updated 10 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Aug 29, 2024Updated last year
- ☆33Oct 4, 2024Updated last year
- The Single-Cell Pathology Landscape of Breast Cancer☆27Jan 14, 2020Updated 6 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Jul 13, 2021Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Sep 9, 2021Updated 4 years ago