wgzgithub / VeTra
☆16Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for VeTra
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- ☆40Updated 3 months ago
- ☆30Updated 7 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆15Updated this week
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆28Updated this week
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 10 months ago
- ☆27Updated 3 months ago
- ☆20Updated last year
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆18Updated 3 weeks ago
- scover☆22Updated last year
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 3 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Updated 5 years ago
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 3 weeks ago
- ☆16Updated last year
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last month
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- Single-cell Case Control Analysis☆47Updated 2 weeks ago
- ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineageCode and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…☆9Updated 4 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated 4 months ago
- Interactive visualisation of CellphoneDB results☆9Updated this week
- ☆29Updated last year
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Updated last year
- scripts for analyzing data of macrophage development in human☆10Updated 4 years ago