Alternatives and similar repositories for portal-ui

Users that are interested in portal-ui are comparing it to the libraries listed below

• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆40Updated 4 years ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• COMBINE-lab / pyroe
  ☆16Updated 10 months ago
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆27Updated 2 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆18Updated 4 years ago
• ismms-himc / clustergrammer2-notebooks
  Examples using Clustergrammer2 to explore high-dimensional datasets.
  ☆40Updated 5 years ago
• gerstung-lab / tensorsignatures
  A python package for learning mutational signatures and their multidimensional genomic properties
  ☆15Updated 5 years ago
• ntranoslab / celltypewriter
  ☆13Updated 2 years ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• vals / Blog
  ☆37Updated 3 weeks ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• chaichontat / samui
  A performant scientific image visualization system.
  ☆36Updated 2 weeks ago
• pachterlab / kite
  kallisto index tag extractor
  ☆20Updated 6 years ago
• iosonofabio / singlet
  Single cell RNA Seq data analysis with quantitative phenotypes
  ☆13Updated 4 years ago
• pachterlab / MBGBLHGP_2019
  Code for reproducing results from the paper "Modular and efficient pre-processing of single-cell RNA-seq data"
  ☆23Updated 4 years ago
• vitessce / vitessceR
  R API and htmlwidget for Vitessce
  ☆43Updated 2 months ago
• gokceneraslan / pyannotables
  Python package for conversions between ENSEMBL IDs and gene names (annotables + pyensembl)
  ☆11Updated last month
• vals / python-gprofiler
  ☆12Updated 6 years ago
• metaspace2020 / metaspace-converter
  Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData
  ☆11Updated last year
• BIMSBbioinfo / netSmooth
  netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation
  ☆28Updated last year
• scverse / anndata-tutorials
  Use cases for anndata.
  ☆14Updated 4 months ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆17Updated 2 years ago
• broadinstitute / scRNA-Seq
  ☆12Updated 2 years ago
• single-cell-data / SOMA
  A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.
  ☆79Updated 4 months ago
• korsunskylab / tessera
  ☆14Updated 2 months ago
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 7 years ago
• hms-dbmi / cistrome-explorer
  Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
  ☆13Updated last year
• normjam / benchmark
  Comparison of single-cell normalization methods using multiple datasets with ground-truth labels
  ☆19Updated 5 years ago
• const-ae / transformGamPoi-Paper
  ☆28Updated 2 years ago
• ncbi / scPopCorn
  A python tool to do comparative analysis of mulitple single cell datasets.
  ☆21Updated 6 years ago