Alternatives and similar repositories for momi2

Users that are interested in momi2 are comparing it to the libraries listed below

• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆47Updated last year
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 4 years ago
• FerRacimo / GRoSS
  Graph-aware Retrieval of Selective Sweeps
  ☆21Updated 8 months ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆32Updated 4 years ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 6 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆37Updated last year
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆34Updated last year
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last month
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• tsackton / linked-selection
  ☆24Updated 7 years ago
• esayyari / DiscoVista
  ☆39Updated last year
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• mfumagalli / ngsPopGen
  Population genetics analyses from NGS data
  ☆25Updated 4 years ago
• joepickrell / pophistory-tutorial
  Tutorial on using popular tools for learning about population history
  ☆51Updated 6 years ago
• russcd / Ancestry_HMM
  ☆29Updated 2 years ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated 2 weeks ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆52Updated 2 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated last year
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆20Updated 3 weeks ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆51Updated 2 weeks ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• ribailey / gghybrid
  R package for analysis of hybrids and hybrid zones
  ☆21Updated last year
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆24Updated last year
• esrud / GONE
  GONE: Scripts, programs and an example data set
  ☆47Updated last year
• gphocs-dev / G-PhoCS
  G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …
  ☆34Updated 4 years ago
• grenaud / ROHan
  Joint inference of heterozygosity rates and runs of homozygosity
  ☆15Updated 9 months ago
• clairemerot / physalia_adaptation_course
  ☆18Updated last year
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year