Scripts to calculate population genetics statistics
☆55Jul 20, 2018Updated 8 years ago
Alternatives and similar repositories for popgen-stats
Users that are interested in popgen-stats are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Population genetics analyses☆23Oct 10, 2019Updated 7 years ago
- Population genetics analyses from NGS data☆28Mar 8, 2021Updated 5 years ago
- Programs to analyse NGS data for population genetics purposes☆183Aug 27, 2024Updated 2 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Handy genetics-related R scripts☆32Nov 22, 2019Updated 6 years ago
- Shiny apps for teaching Population Genetics☆66Feb 4, 2023Updated 3 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Oct 24, 2019Updated 7 years ago
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Tutorial about R package PopGenome☆44Mar 1, 2019Updated 7 years ago
- ☆24Jun 9, 2017Updated 9 years ago
- Infer demographic history with the Moran model☆52Jun 14, 2025Updated last year
- Useful bioinformatic scripts☆62Feb 23, 2026Updated 8 months ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆40May 21, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆13Apr 30, 2019Updated 7 years ago
- Module for analysing admixture graphs☆30Apr 30, 2018Updated 8 years ago
- Vignettes for Population Genetics in R☆26Aug 11, 2020Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆45Nov 13, 2019Updated 7 years ago
- Model-free inference of tree sequences from unphased genotypes☆14May 22, 2026Updated 5 months ago
- A primer for computational tools to analyze genetics of populations in R☆92Sep 11, 2026Updated 2 months ago
- Haplotype based scans for selection☆151Updated this week
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Repository for pipeline code☆26Feb 28, 2024Updated 2 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 8 years ago
- Methods for examining PCA locally along the genome.☆91Aug 13, 2024Updated 2 years ago
- ☆32Nov 25, 2019Updated 6 years ago
- Population genetics notes☆709Jun 1, 2023Updated 3 years ago
- R Package for performing Qst-Fst analyses☆21Nov 14, 2017Updated 9 years ago
- Scripts of population genomics analysis☆36May 8, 2018Updated 8 years ago
- Versatile tool for detecting selective sweeps with a variety of ages, strengths, starting allele frequencies, and completeness.☆15Feb 16, 2026Updated 8 months ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 13 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 9 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- Estimate recombination rates from population genetic data☆72Jun 10, 2020Updated 6 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆184Apr 17, 2026Updated 6 months ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated 2 months ago
- Likelihood-based Selective Sweep Detection☆43Oct 12, 2023Updated 3 years ago
- ☆12Nov 23, 2020Updated 5 years ago
Are these results useful?