tatumdmortimer / popgen-statsLinks
Scripts to calculate population genetics statistics
☆55Updated 7 years ago
Alternatives and similar repositories for popgen-stats
Users that are interested in popgen-stats are comparing it to the libraries listed below
Sorting:
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated this week
- Methods for examining PCA locally along the genome.☆86Updated last year
- Synteny Imager☆65Updated 3 weeks ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- Estimate recombination rates from population genetic data☆70Updated 5 years ago
- ☆45Updated 9 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆69Updated 2 months ago
- A program to call variants from genome alignment☆81Updated 8 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- ☆24Updated 8 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85Updated 4 years ago
- Assessing confidence in introgression among four populations☆28Updated 4 years ago