tatumdmortimer / popgen-statsLinks
Scripts to calculate population genetics statistics
☆55Updated 7 years ago
Alternatives and similar repositories for popgen-stats
Users that are interested in popgen-stats are comparing it to the libraries listed below
Sorting:
- Synteny Imager☆65Updated last week
- Methods for examining PCA locally along the genome.☆86Updated last year
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated this week
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆60Updated last month
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- A pipeline to generate a phylogenetic tree from huge SNP data☆93Updated 2 years ago
- ☆45Updated 9 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated 11 months ago
- Estimate recombination rates from population genetic data☆70Updated 5 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆43Updated 6 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- A program to call variants from genome alignment☆81Updated 8 months ago
- Rank-based Gene Ontology analysis of gene expression data☆43Updated 3 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- k-mer learning materials☆81Updated 10 months ago
- ☆24Updated 8 years ago
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago
- Transcripts annotation and GO enrichment Fisher tests☆27Updated 2 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆33Updated last year