Alternatives and similar repositories for gamma_smc

Users that are interested in gamma_smc are comparing it to the libraries listed below

• ksiewert / BetaScan
  Genome-wide scan for balancing selection using beta statistic
  ☆29Updated 2 years ago
• kristinmlee / dmc
  Distinguishing among modes of convergent adaptation using population genomic data: statistical inference method, extensions, and examples
  ☆13Updated 6 years ago
• ulasisik / balancing-selection
  ☆13Updated 4 years ago
• SamueleSoraggi / HMMploidy
  A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
  ☆18Updated 3 years ago
• GLBRC / sppIDer
  a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data
  ☆19Updated 6 years ago
• alachins / sweed
  Likelihood-based Selective Sweep Detection
  ☆40Updated 2 years ago
• avaughn271 / CLUES2
  The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.
  ☆16Updated 8 months ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆22Updated 3 weeks ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆50Updated 6 months ago
• paula-tataru / polyDFE
  predicting DFE and alpha from polymorphism data
  ☆28Updated 7 years ago
• simonhmartin / dfs
  D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum
  ☆19Updated 5 years ago
• tulerpetontidae / psmc-python
  A reimplementation of a classical PSMC method in python for educational purposes
  ☆17Updated last year
• Sendrowski / fastDFE
  Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…
  ☆18Updated last week
• aubombarely / GenoToolBox
  A box of genomics tools
  ☆21Updated 5 years ago
• danjlawson / badMIXTURE
  R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes
  ☆29Updated 6 years ago
• xin-huang / dadi-cli
  Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra
  ☆18Updated 3 weeks ago
• owensgl / reformat
  Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format
  ☆13Updated 10 months ago
• clairemerot / physalia_adaptation_course
  ☆18Updated 2 years ago
• ThibaultLeroyFr / Intro2PopGenomics
  Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts
  ☆21Updated 6 years ago
• jradrion / TEFLoN
  TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.
  ☆13Updated 4 years ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆42Updated 4 months ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆33Updated last year
• Rosemeis / pcangsd
  Framework for analyzing low depth NGS data in heterogeneous populations using PCA.
  ☆56Updated 6 months ago
• malthesr / winsfs
  Site frequency spectrum estimation based on window expectation-maximisation algorithm
  ☆14Updated 2 years ago
• Tom-Jenkins / utility_scripts
  Scripts for population genetics analysis
  ☆20Updated 3 years ago
• sriramlab / ArchIE
  A statistical framework for reference-free inference of archaic local ancestry
  ☆16Updated 6 years ago
• bergmanlab / TELR
  TELR is a fast non-reference transposable element detector from long read sequencing data.
  ☆35Updated 2 years ago
• jesvedberg / Ancestry_HMM-S
  Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
  ☆19Updated 2 years ago
• stschiff / msmc-tools
  Tools and Utilities for msmc and msmc2
  ☆49Updated 4 months ago
• TCLamnidis / AdmixturePlotter
  An R script to generate plots for ADMIXTURE runs, for multiple K values.
  ☆19Updated 10 months ago