☆21Jan 11, 2024Updated 2 years ago
Alternatives and similar repositories for gamma_smc
Users that are interested in gamma_smc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated 11 months ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆14May 29, 2024Updated last year
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated last year
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- Ascertained Sequentially Markovian Coalescent☆16Oct 22, 2025Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆18Apr 9, 2025Updated 11 months ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆24Aug 7, 2023Updated 2 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 4 years ago
- machine learning applications for dadi☆17Jan 23, 2025Updated last year
- Consensus genome annotation using OMA☆31Jan 14, 2026Updated 2 months ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 6 years ago
- GONE: Scripts, programs and an example data set☆52Jul 20, 2025Updated 8 months ago
- R Port of psmc☆17Mar 16, 2023Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 2 months ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 2 months ago
- Materials for the INF 515: Comparative Genomics course at NAU taught by Prof. Marc Tollis☆13Apr 3, 2025Updated 11 months ago
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆31Mar 11, 2026Updated 2 weeks ago
- ☆13Aug 18, 2023Updated 2 years ago
- Accelerated Bayesian inference of population size history from whole genome data.☆34Sep 29, 2025Updated 5 months ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- ☆13Dec 3, 2024Updated last year
- ☆68Dec 5, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Mar 4, 2026Updated 3 weeks ago
- MSMC2 Scripts☆28Sep 24, 2025Updated 6 months ago
- ☆56Jun 12, 2025Updated 9 months ago
- Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …☆17Jun 28, 2023Updated 2 years ago
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Detect recombination hotspots using population genetic data.☆17Jun 10, 2020Updated 5 years ago
- Fast genome analysis from unassembled short reads☆317Apr 8, 2024Updated last year
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 2 months ago
- ☆12Sep 14, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Implementation of the multiple sequential markovian coalescent☆91Aug 5, 2025Updated 7 months ago
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆26Mar 8, 2026Updated 2 weeks ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆11Mar 20, 2026Updated last week
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 9 months ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- ☆13Sep 11, 2025Updated 6 months ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago