☆22Jan 11, 2024Updated 2 years ago
Alternatives and similar repositories for gamma_smc
Users that are interested in gamma_smc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for estimating time-dependent migration rates based on cross-/within-population coalescent rates from MSMC☆16Apr 6, 2025Updated last year
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated 2 years ago
- An R package to estimate the timing of selection for a beneficial allele.☆14Dec 2, 2021Updated 4 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated 2 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Aug 7, 2023Updated 3 years ago
- cobraa (coalescent based reconstruction of ancient admixture): a hidden Markov model to infer ghost admixture using just a diploid sequen…☆25Jun 17, 2025Updated last year
- This is a tool to estimate pairwise relatedness from ancient DNA, taking in account contamination, ROH, ascertainment bias.☆16Aug 6, 2024Updated 2 years ago
- machine learning applications for dadi☆16Jan 23, 2025Updated last year
- Sampling and inference of genealogies with recombination☆64Aug 21, 2026Updated last month
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- Rescale genetic polymorphism data to match a common sample size.☆15Nov 4, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Ascertained Sequentially Markovian Coalescent☆19Oct 22, 2025Updated 11 months ago
- Inference of population structure from time-series genotype data☆15Jul 9, 2019Updated 7 years ago
- GitHub repository for GenErode, a Snakemake workflow for the analysis of whole-genome sequencing data from historical and modern samples …☆32May 18, 2026Updated 4 months ago
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 9 months ago
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 9 months ago
- R Port of psmc☆16Mar 16, 2023Updated 3 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 9 months ago
- Materials for the INF 515: Comparative Genomics course at NAU taught by Prof. Marc Tollis☆15Sep 21, 2026Updated 3 weeks ago
- PSMC-based Migration and Split Time Inference (MiSTI) from two genomes☆12Oct 5, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆20Mar 31, 2026Updated 6 months ago
- ☆13Aug 18, 2023Updated 3 years ago
- MSMC2 Scripts☆28May 29, 2026Updated 4 months ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Nov 9, 2019Updated 6 years ago
- ☆14Dec 3, 2024Updated last year
- ☆73Dec 5, 2022Updated 3 years ago
- Fast and memory efficient partial order alignment with minipoa☆22Oct 1, 2026Updated 2 weeks ago
- ☆59Jun 12, 2025Updated last year
- Main scripts and commands used to analyze goat population genetic and domestication☆19Mar 25, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …☆18Jun 28, 2023Updated 3 years ago
- Detect recombination hotspots using population genetic data.☆17Jun 10, 2020Updated 6 years ago
- Fast genome analysis from unassembled short reads☆327Apr 8, 2024Updated 2 years ago
- Automated pipeline for running CoalHMM☆13Jan 9, 2026Updated 9 months ago
- ☆13Jul 8, 2026Updated 3 months ago
- diveRsity: A comprehensive, general purpose population genetics analysis package.☆27Mar 8, 2026Updated 7 months ago
- Implementation of the multiple sequential markovian coalescent☆92Aug 5, 2025Updated last year