Program for analysing NGS data.
☆263Mar 6, 2025Updated last year
Alternatives and similar repositories for angsd
Users that are interested in angsd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SMC++ infers population history from whole-genome sequence data.☆177Jan 20, 2024Updated 2 years ago
- Programs to analyse NGS data for population genetics purposes☆181Aug 27, 2024Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆61Jun 27, 2025Updated last year
- General tools for genomic analyses.☆393Mar 25, 2026Updated 3 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆192Dec 19, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 6 months ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- Tutorials on evolutionary genomics☆47Mar 11, 2022Updated 4 years ago
- Tools test whether admixture occurred and more☆232Jul 13, 2026Updated last week
- Software for painlessly estimating average nucleotide diversity within and between populations☆167Updated this week
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆177Apr 17, 2026Updated 3 months ago
- Implementation of the multiple sequential markovian coalescent☆92Aug 5, 2025Updated 11 months ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- Code to compute the XP-CLR statistic to infer natural selection☆107Jun 13, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Find, circularise and annotate mitogenome from PacBio assemblies☆199May 11, 2025Updated last year
- ☆49Jun 26, 2026Updated 3 weeks ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆89Jun 14, 2021Updated 5 years ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated last year
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆193Nov 17, 2025Updated 8 months ago
- Official home of genome aligner based upon notion of Cactus graphs☆697Updated this week
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆70Apr 9, 2026Updated 3 months ago
- Estimating Effective Migration Surfaces☆112Oct 28, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Useful bioinformatic scripts☆60Feb 23, 2026Updated 5 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆571Feb 14, 2024Updated 2 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆682Mar 20, 2026Updated 4 months ago
- Scripts for analysis used during the course☆98Apr 30, 2024Updated 2 years ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆339Jul 7, 2023Updated 3 years ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆19Dec 18, 2025Updated 7 months ago
- Tutorials on phylogenetic and phylogenomic inference☆401Apr 12, 2026Updated 3 months ago
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 3 years ago
- Haplotype based scans for selection☆149Jun 5, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…☆67Apr 25, 2024Updated 2 years ago
- Mummer alignment tool☆567Feb 4, 2025Updated last year
- Program for aligning DNA sequences, a pairwise aligner.☆251May 20, 2026Updated 2 months ago
- Population-scale genotyping using pangenome graphs☆201Jan 9, 2025Updated last year
- Hybridization detection using phylogenetic invariants☆53Oct 29, 2024Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆209Jul 16, 2026Updated last week