ANGSD / angsdLinks
Program for analysing NGS data.
☆243Updated 5 months ago
Alternatives and similar repositories for angsd
Users that are interested in angsd are comparing it to the libraries listed below
Sorting:
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆313Updated 2 years ago
- Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model☆170Updated 2 years ago
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆274Updated 3 weeks ago
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆208Updated last year
- Genome Assembly and Annotation Service code☆214Updated last year
- PASA software☆192Updated 5 months ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆193Updated 11 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆208Updated last month
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆175Updated 7 months ago
- ☆213Updated 6 months ago
- ☆257Updated last month
- A library for running k-mers based GWAS☆112Updated 9 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated 9 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 9 months ago
- Tool to plot synteny and structural rearrangements between genomes☆318Updated 4 months ago
- De-Novo Repeat Discovery Tool☆216Updated 3 weeks ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆155Updated last year
- Software for painlessly estimating average nucleotide diversity within and between populations☆140Updated this week
- General tools for genomic analyses.☆367Updated 5 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆190Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- k-mer based assembly evaluation☆321Updated last year
- VGP repository for the genome assembly working group☆193Updated 2 months ago
- Quality control for MinION sequencing data☆217Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆229Updated 7 months ago
- haplotypic duplication identification tool☆249Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆266Updated last month