Alternatives and similar repositories for dadi_pipeline:

Users that are interested in dadi_pipeline are comparing it to the libraries listed below

• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆76Updated 3 months ago
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆90Updated 11 months ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆46Updated 5 months ago
• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆170Updated 4 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆58Updated 5 months ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated this week
• nt246 / lcwgs-guide-tutorial
  ☆84Updated 3 years ago
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆163Updated last year
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆54Updated last month
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆148Updated 8 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last week
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆42Updated 3 years ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆95Updated 2 years ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆24Updated last year
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆78Updated 8 months ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆25Updated 9 months ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆34Updated last year
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 6 months ago
• hewm2008 / VCF2PCACluster
  A new simple and efficient software to PCA and Cluster For popolation VCF File
  ☆70Updated 2 months ago
• millanek / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆43Updated 2 months ago
• speciationgenomics / presentations
  Presentations from the course
  ☆36Updated last year
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated 2 months ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆11Updated last year
• szpiech / selscan
  Haplotype based scans for selection
  ☆123Updated this week
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆115Updated 9 months ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆88Updated 5 months ago
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated last month