Alternatives and similar repositories for dadi_pipeline:

Users that are interested in dadi_pipeline are comparing it to the libraries listed below

• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated this week
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆46Updated 4 months ago
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆88Updated 10 months ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆57Updated 4 months ago
• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆168Updated 3 months ago
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆74Updated 2 months ago
• nt246 / lcwgs-guide-tutorial
  ☆85Updated 3 years ago
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆147Updated 7 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last month
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆77Updated 7 months ago
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆53Updated this week
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆161Updated last year
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆24Updated last year
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• clairemerot / angsd_pipeline
  ☆26Updated last year
• millanek / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆43Updated last month
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆119Updated 2 months ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆42Updated 3 years ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 8 months ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆11Updated last year
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆94Updated 2 years ago
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆18Updated 2 weeks ago
• speciationgenomics / presentations
  Presentations from the course
  ☆36Updated last year
• pontussk / PMDtools
  Compute postmortem damage patterns and decontaminate ancient genomes
  ☆15Updated 3 years ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆31Updated last year
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• hewm2008 / VCF2PCACluster
  A new simple and efficient software to PCA and Cluster For popolation VCF File
  ☆69Updated last month
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆16Updated last month
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago