Alternatives and similar repositories for dadi_pipeline:

Users that are interested in dadi_pipeline are comparing it to the libraries listed below

• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆73Updated 2 weeks ago
• nt246 / lcwgs-guide-tutorial
  ☆79Updated 3 years ago
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆85Updated 8 months ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated last month
• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆166Updated 3 weeks ago
• hardingnj / xpclr
  Code to compute the XP-CLR statistic to infer natural selection
  ☆91Updated 2 years ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆44Updated 2 months ago
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆141Updated 5 months ago
• millanek / tutorials
  Tutorials on phylogenetic and phylogenomic inference
  ☆41Updated 8 months ago
• simonhmartin / tutorials
  Tutorials on evolutionary genomics
  ☆42Updated 2 years ago
• nt246 / physalia-lcwgs
  Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
  ☆56Updated 2 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 5 years ago
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆157Updated 11 months ago
• hewm2008 / VCF2PCACluster
  A new simple and efficient software to PCA and Cluster For popolation VCF File
  ☆67Updated 2 weeks ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆11Updated last year
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆73Updated 5 months ago
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆30Updated 10 months ago
• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 5 months ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆23Updated 10 months ago
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 4 years ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆57Updated 2 weeks ago
• speciationgenomics / presentations
  Presentations from the course
  ☆36Updated last year
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆26Updated last week
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆51Updated 4 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 2 years ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆85Updated last month
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆58Updated 3 months ago
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆106Updated 2 months ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 5 years ago