☆13Apr 30, 2019Updated 7 years ago
Alternatives and similar repositories for tools
Users that are interested in tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Assemble and following pipeline used in wisent genome paper.☆18Dec 23, 2016Updated 9 years ago
- Scripts of population genomics analysis☆36May 8, 2018Updated 8 years ago
- Useful bioinformatic scripts☆61Feb 23, 2026Updated 8 months ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tutorials on evolutionary genomics☆48Mar 11, 2022Updated 4 years ago
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Sep 19, 2020Updated 6 years ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 3 years ago
- Tutorial on using popular tools for learning about population history☆57Jul 18, 2018Updated 8 years ago
- Prior-Oblivious Length Estimation in Genealogies with Oriented Network☆13Jan 22, 2025Updated last year
- Infer demographic history with the Moran model☆52Jun 14, 2025Updated last year
- Model-free inference of tree sequences from unphased genotypes☆13May 22, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 5 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 8 years ago
- ☆49Oct 17, 2025Updated last year
- Divergence time estimation in the complex history of gene family evolution☆11Updated this week
- A pipeline to identify gene family using mutiple tools and scripts.☆12Aug 22, 2021Updated 5 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Jan 10, 2024Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆193Dec 19, 2024Updated last year
- Assessing confidence in introgression among four populations☆29Apr 19, 2021Updated 5 years ago
- ☆12Feb 16, 2026Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Filters for Next Generation Sequencing☆13Oct 31, 2024Updated last year
- Drawing functions for Demes demographic models☆24Jul 20, 2026Updated 3 months ago
- ☆12May 13, 2024Updated 2 years ago
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 13 years ago
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆12Jan 17, 2020Updated 6 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 8 years ago
- Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.☆10Jan 11, 2021Updated 5 years ago
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 5 years ago
- ☆23Jun 11, 2026Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Module for analysing admixture graphs☆30Apr 30, 2018Updated 8 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆29Feb 13, 2020Updated 6 years ago
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Selection outlier scan with population branch statistic☆14Feb 21, 2024Updated 2 years ago
- Daily usage script recording☆12Sep 23, 2026Updated last month
- ☆16Jul 9, 2026Updated 3 months ago
- ☆49Sep 5, 2023Updated 3 years ago