petrelharp / local_pcaLinks
Methods for examining PCA locally along the genome.
☆86Updated last year
Alternatives and similar repositories for local_pca
Users that are interested in local_pca are comparing it to the libraries listed below
Sorting:
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆43Updated 6 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆68Updated 2 months ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- Repository for speciation genomics website☆27Updated 4 months ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- A pipeline that accepts a VCF file to run through Admixture☆63Updated 11 months ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated 2 months ago
- Tools and Utilities for msmc and msmc2☆49Updated 4 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated this week
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- Presentations from the course☆38Updated 2 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Estimate recombination rates from population genetic data☆70Updated 5 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- GONE: Scripts, programs and an example data set☆48Updated 5 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 6 months ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- Scripts to calculate population genetics statistics☆55Updated 7 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- ☆24Updated 8 years ago