Methods for examining PCA locally along the genome.
☆88Aug 13, 2024Updated last year
Alternatives and similar repositories for local_pca
Users that are interested in local_pca are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- WinPCA. A package for windowed principal component analysis.☆48Apr 2, 2026Updated 2 weeks ago
- Scripts and resources for the haploblocks manuscript☆18Mar 20, 2020Updated 6 years ago
- ☆15Jun 12, 2020Updated 5 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Mar 27, 2026Updated 2 weeks ago
- ☆46Mar 18, 2025Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 10 months ago
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆45Jul 25, 2025Updated 8 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- genotype dimensionality reduction with a VAE☆48Mar 11, 2025Updated last year
- An R package to help in plotting PCA results nicely.☆12Jan 16, 2020Updated 6 years ago
- ABLE - Approximate Blockwise Likelihood Estimation☆17Jul 4, 2018Updated 7 years ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆30Sep 27, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆47Mar 7, 2024Updated 2 years ago
- Likelihood-based Selective Sweep Detection☆42Oct 12, 2023Updated 2 years ago
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆15Aug 11, 2023Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆57Sep 30, 2022Updated 3 years ago
- ☆17Dec 2, 2015Updated 10 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆60Jun 27, 2025Updated 9 months ago
- Demographic analysis of Brassica oleracea☆10Jan 30, 2026Updated 2 months ago
- General tools for genomic analyses.☆389Mar 25, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes inc…☆49Mar 20, 2026Updated 3 weeks ago
- GONE: Scripts, programs and an example data set☆54Jul 20, 2025Updated 8 months ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated 2 weeks ago
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 2 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆113Jun 24, 2025Updated 9 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆159Apr 4, 2026Updated last week
- Haplotype based scans for selection☆145Apr 1, 2026Updated 2 weeks ago
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆17May 19, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast analysis and visualization of latent clusters in population genetic data☆78Mar 29, 2022Updated 4 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 3 weeks ago
- Programs to analyse NGS data for population genetics purposes☆181Aug 27, 2024Updated last year
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆173Aug 8, 2024Updated last year
- ☆32Jun 15, 2023Updated 2 years ago