stschiff / msmcLinks
Implementation of the multiple sequential markovian coalescent
☆89Updated 5 months ago
Alternatives and similar repositories for msmc
Users that are interested in msmc are comparing it to the libraries listed below
Sorting:
- ☆65Updated 3 years ago
- Estimate recombination rates from population genetic data☆70Updated 5 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated this week
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆49Updated 5 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆60Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago
- Tutorial about R package PopGenome☆43Updated 6 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆93Updated 2 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Methods for examining PCA locally along the genome.☆86Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- ☆45Updated 9 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- Synteny Imager☆65Updated 2 weeks ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆34Updated 2 months ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- ☆24Updated 8 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆57Updated 6 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆105Updated 7 months ago