stschiff / msmcLinks
Implementation of the multiple sequential markovian coalescent
☆87Updated last year
Alternatives and similar repositories for msmc
Users that are interested in msmc are comparing it to the libraries listed below
Sorting:
- ☆57Updated 2 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated this week
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 8 months ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- ☆44Updated 8 years ago
- ☆86Updated 3 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆56Updated 2 years ago
- Genome Annotation Without Nightmares☆45Updated 4 months ago
- Estimate recombination rates from population genetic data☆66Updated 4 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆53Updated last week
- A library for running k-mers based GWAS☆109Updated 7 months ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- Synteny Imager☆62Updated 9 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated last month
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- NLR-Annotator upload☆66Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆99Updated 3 weeks ago
- Assembly statistic visualisation☆90Updated last year
- A pipeline to generate a phylogenetic tree from huge SNP data☆87Updated last year
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated last week
- Generates an NCBI .tbl file of annotations on a genome.☆67Updated 7 years ago
- A pipeline that accepts a VCF file to run through Admixture☆60Updated 5 months ago
- Scripts to calculate population genetics statistics☆55Updated 6 years ago
- Methods for examining PCA locally along the genome.☆79Updated 9 months ago