stschiff / msmc
Implementation of the multiple sequential markovian coalescent
☆87Updated last year
Related projects ⓘ
Alternatives and complementary repositories for msmc
- ☆53Updated last year
- Analysis of convergence between organismal traits and DNA/protein sequences☆46Updated 4 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆43Updated 3 months ago
- ☆76Updated 3 years ago
- Automated de novo assembly of whole chloroplast genomes.☆44Updated last month
- A set of functions to visualise genotypes based on a VCF☆84Updated 2 years ago
- Pinpoints the mutation favored by selection☆32Updated 3 years ago
- Detecting natural selection from population-based genetic data☆27Updated 5 years ago
- Tools and Utilities for msmc and msmc2☆46Updated last year
- A pipeline that accepts a VCF file to run through Admixture☆56Updated 2 months ago
- ☆43Updated 7 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆24Updated 6 years ago
- NLR-Annotator upload☆60Updated last year
- feature-based deep learning for the identification of selective sweeps☆50Updated 2 months ago
- Synteny Imager☆60Updated 2 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆68Updated 3 years ago
- Scripts to calculate population genetics statistics☆54Updated 6 years ago
- paml documentation and tutorials☆47Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆51Updated last year
- Methods for examining PCA locally along the genome.☆71Updated 3 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated last week
- Presentations from the course☆36Updated last year
- Tutorial about R package PopGenome☆40Updated 5 years ago
- Genome Annotation Without Nightmares☆43Updated last year
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆21Updated last year
- Estimate recombination rates from population genetic data☆60Updated 4 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated last month