mathii / gdcLinks
Short scripts for converting genetic data between formats.
☆30Updated 3 years ago
Alternatives and similar repositories for gdc
Users that are interested in gdc are comparing it to the libraries listed below
Sorting:
- Tools and Utilities for msmc and msmc2☆50Updated last week
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- ☆24Updated 8 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- Infer demographic history with the Moran model☆51Updated 7 months ago
- Methods for examining PCA locally along the genome.☆87Updated last year
- Population genetics analyses from NGS data☆26Updated 4 years ago
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Updated last year
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 6 years ago
- ☆13Updated 4 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- Assessing confidence in introgression among four populations☆28Updated 4 years ago
- Pinpoints the mutation favored by selection☆34Updated 4 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆48Updated last week
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆37Updated 2 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆28Updated 7 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 3 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Updated 2 years ago
- A pipeline that accepts a VCF file to run through Admixture☆63Updated last year
- Estimate recombination rates from population genetic data☆71Updated 5 years ago
- Detecting natural selection from population-based genetic data☆28Updated 6 years ago
- ☆66Updated 3 years ago
- Tutorials on evolutionary genomics☆46Updated 3 years ago
- Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022☆69Updated 3 months ago
- ☆45Updated 3 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆58Updated 7 months ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago