Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
☆191Nov 17, 2025Updated 6 months ago
Alternatives and similar repositories for psmc
Users that are interested in psmc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of the multiple sequential markovian coalescent☆92Aug 5, 2025Updated 10 months ago
- ☆70Dec 5, 2022Updated 3 years ago
- SMC++ infers population history from whole-genome sequence data.☆176Jan 20, 2024Updated 2 years ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 11 months ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 4 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆190Dec 19, 2024Updated last year
- Program for analysing NGS data.☆260Mar 6, 2025Updated last year
- General tools for genomic analyses.☆391Mar 25, 2026Updated 2 months ago
- R Port of psmc☆17Mar 16, 2023Updated 3 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆19Sep 19, 2020Updated 5 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- Haplotype based scans for selection☆148Updated this week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆208Aug 15, 2024Updated last year
- ☆12Nov 23, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆71Apr 9, 2026Updated 2 months ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated last year
- Find, circularise and annotate mitogenome from PacBio assemblies☆197May 11, 2025Updated last year
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆176Apr 17, 2026Updated last month
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 5 months ago
- Fast analysis and visualization of latent clusters in population genetic data☆78Mar 29, 2022Updated 4 years ago
- Fast genome analysis from unassembled short reads☆322Apr 8, 2024Updated 2 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆66Sep 5, 2019Updated 6 years ago
- Topology weighting by iterative sampling of sub-trees☆88Jan 5, 2025Updated last year
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 12 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆121Apr 7, 2021Updated 5 years ago
- Accurate Species TRee ALgorithm☆279Apr 1, 2024Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 4 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 3 years ago
- Hybridization detection using phylogenetic invariants☆51Oct 29, 2024Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆336Jul 7, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆113Feb 28, 2026Updated 3 months ago
- ☆16Feb 26, 2026Updated 3 months ago
- Version 5 of the CAFE phylogenetics software☆170Mar 16, 2026Updated 2 months ago
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆23Nov 21, 2023Updated 2 years ago
- ☆26Jan 26, 2026Updated 4 months ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆218Jul 5, 2025Updated 11 months ago