Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
☆195Nov 17, 2025Updated 10 months ago
Alternatives and similar repositories for psmc
Users that are interested in psmc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Implementation of the multiple sequential markovian coalescent☆92Aug 5, 2025Updated last year
- ☆72Dec 5, 2022Updated 3 years ago
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Infer demographic history with the Moran model☆52Jun 14, 2025Updated last year
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆191Dec 19, 2024Updated last year
- Program for analysing NGS data.☆265Mar 6, 2025Updated last year
- General tools for genomic analyses.☆396Mar 25, 2026Updated 5 months ago
- R Port of psmc☆16Mar 16, 2023Updated 3 years ago
- D Frequency Spectrum: Signatures of introgression across the allele frequency spectrum☆18Sep 19, 2020Updated 6 years ago
- Haplotype based scans for selection☆150Jun 5, 2026Updated 3 months ago
- ☆12Nov 23, 2020Updated 5 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆211Jul 16, 2026Updated 2 months ago
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 13 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A reimplementation of a classical PSMC method in python for educational purposes☆17Jul 22, 2024Updated 2 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆201May 11, 2025Updated last year
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated 8 months ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆182Apr 17, 2026Updated 5 months ago
- Fast analysis and visualization of latent clusters in population genetic data☆77Mar 29, 2022Updated 4 years ago
- Fast genome analysis from unassembled short reads☆327Apr 8, 2024Updated 2 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 3 years ago
- Topology weighting by iterative sampling of sub-trees☆89Jan 5, 2025Updated last year
- A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)☆65Sep 5, 2019Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆75Apr 9, 2026Updated 5 months ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆46Nov 21, 2019Updated 6 years ago
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- R package to draw syntenic plots in 3 different styles☆47Feb 2, 2026Updated 7 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆126Apr 7, 2021Updated 5 years ago
- Accurate Species TRee ALgorithm☆280Apr 1, 2024Updated 2 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆108Jun 13, 2022Updated 4 years ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆115Jul 11, 2026Updated 2 months ago
- A tool for recovering synteny blocks from multiple alignment☆34Oct 18, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆26Nov 21, 2023Updated 2 years ago
- Hybridization detection using phylogenetic invariants☆53Oct 29, 2024Updated last year
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆343Jul 7, 2023Updated 3 years ago
- ☆16Jul 9, 2026Updated 2 months ago
- Version 5 of the CAFE phylogenetics software☆179Mar 16, 2026Updated 6 months ago
- ☆26Aug 14, 2026Updated last month
- Scripts used in the annotation of B10K genomes☆16Jun 1, 2020Updated 6 years ago