lh3 / psmcLinks
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
☆181Updated last month
Alternatives and similar repositories for psmc
Users that are interested in psmc are comparing it to the libraries listed below
Sorting:
- SMC++ infers population history from whole-genome sequence data.☆170Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆201Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆183Updated last year
- A library for running k-mers based GWAS☆123Updated last year
- Software for painlessly estimating average nucleotide diversity within and between populations☆148Updated 2 months ago
- Haplotype based scans for selection☆137Updated this week
- ☆229Updated 11 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Scripts for analysis used during the course☆93Updated last year
- Code to compute the XP-CLR statistic to infer natural selection☆101Updated 3 years ago
- Version 5 of the CAFE phylogenetics software☆158Updated 10 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago
- Reference-free profiling of polyploid genomes☆138Updated 3 months ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- Program for analysing NGS data.☆250Updated 10 months ago
- PASA software☆197Updated 10 months ago
- MITObim - mitochondrial baiting and iterative mapping☆113Updated 5 years ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216Updated 6 months ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆165Updated last year
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆101Updated 4 months ago
- Any Way to Show Multi genomic Synteny☆215Updated 6 months ago
- Collection of tools and resources for linked-reads☆12Updated 8 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆174Updated 4 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆189Updated 7 months ago
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- ☆98Updated 4 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆108Updated last month
- Ultra-fast de novo assembler using long noisy reads☆135Updated 4 years ago