popgenmethods / pyrhoLinks
Fast inference of fine-scale recombination rates based on fused-LASSO
☆51Updated 2 months ago
Alternatives and similar repositories for pyrho
Users that are interested in pyrho are comparing it to the libraries listed below
Sorting:
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated last year
- Two locus likelihoods and ARGs under changing population size☆14Updated 2 months ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Sweep Inference Framework (controlling for correlation)☆29Updated 10 months ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 weeks ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆24Updated 7 years ago
- Transfer coordinates across genomes☆23Updated 2 weeks ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 6 months ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- Short scripts for converting genetic data between formats.☆29Updated 2 years ago
- Infer demographic history with the Moran model☆47Updated 3 months ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 weeks ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- ☆43Updated 2 months ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated this week
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 3 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 8 months ago
- Estimate recombination rates from population genetic data☆66Updated 4 years ago
- Evolutionary Transcriptomics with R☆43Updated last week
- R code to compute the Singleton Density Score (SDS)☆31Updated 8 years ago
- ☆20Updated 4 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year