popgenmethods / pyrhoLinks
Fast inference of fine-scale recombination rates based on fused-LASSO
☆55Updated last month
Alternatives and similar repositories for pyrho
Users that are interested in pyrho are comparing it to the libraries listed below
Sorting:
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Updated 6 years ago
- ☆66Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆50Updated 2 weeks ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆58Updated 7 months ago
- Genealogical Estimation of Variant Age (GEVA)☆32Updated 4 years ago
- Genome-wide scan for balancing selection using beta statistic☆32Updated 2 years ago
- Estimate recombination rates from population genetic data☆71Updated 5 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆47Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆35Updated 6 months ago
- Haplotype and population structure inference using neural networks.☆28Updated last year
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Updated 6 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆53Updated 7 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆66Updated 3 weeks ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- ☆16Updated 9 years ago
- Sampling and inference of genealogies with recombination☆50Updated 7 months ago
- Infer demographic history with the Moran model☆51Updated 7 months ago
- Sweep Inference Framework (controlling for correlation)☆28Updated last year
- ☆46Updated 10 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated 2 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particula…☆20Updated 7 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 7 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Transfer coordinates across genomes☆23Updated 8 months ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆58Updated 10 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago