hall-lab / sv-pipeline
Pipeline for structural variation detection in cohorts
☆49Updated 3 years ago
Alternatives and similar repositories for sv-pipeline:
Users that are interested in sv-pipeline are comparing it to the libraries listed below
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- ☆39Updated 6 months ago
- ☆39Updated 10 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- ☆35Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Structural variant merging tool☆49Updated 6 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆48Updated 4 years ago
- ☆51Updated 5 years ago
- Variant annotation and merging pipeline☆32Updated 2 months ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆30Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆35Updated 8 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated this week
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated last week
- Structural variant caller☆54Updated 3 years ago
- Support Vector Structural Variation Genotyper☆58Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆75Updated last year
- ☆22Updated 3 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago