hall-lab / sv-pipeline
Pipeline for structural variation detection in cohorts
☆49Updated 3 years ago
Alternatives and similar repositories for sv-pipeline:
Users that are interested in sv-pipeline are comparing it to the libraries listed below
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Structural variant merging tool☆49Updated 8 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆51Updated 5 years ago
- ☆39Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- ☆39Updated 7 months ago
- ☆22Updated 4 months ago
- ☆35Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Structural variant caller☆54Updated 3 years ago
- ☆79Updated 2 months ago
- for visual evaluation of read support for structural variation☆52Updated 11 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated last week
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Variant annotation and merging pipeline☆33Updated last month
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 9 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- Burden testing against public controls☆50Updated last year
- Liftover VCF files☆18Updated 8 years ago
- ☆20Updated 2 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 10 months ago
- CN-Learn☆29Updated 5 years ago