Alternatives and similar repositories for sv-pipeline

Users that are interested in sv-pipeline are comparing it to the libraries listed below

• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆38Updated 9 years ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆55Updated last year
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• EichlerLab / smrtsv2
  Structural variant caller
  ☆55Updated 3 years ago
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆58Updated 3 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• ljdursi / mergevcf
  Python package and routines for merging VCF files
  ☆29Updated 4 years ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆39Updated 3 months ago
• dantaki / SV2
  Support Vector Structural Variation Genotyper
  ☆58Updated 5 years ago
• mchaisso / blasr
  This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…
  ☆22Updated 6 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆43Updated 3 months ago
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated last month
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆63Updated last year
• Nextomics / nextsv
  ☆37Updated last year
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆38Updated last year
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆35Updated 8 years ago
• MeHelmy / princess
  ☆81Updated 7 months ago
• mulinlab / VarNote
  Fast and scalable variant annotation tool
  ☆30Updated 3 years ago
• fakedrtom / SVAFotate
  ☆44Updated last year
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 10 years ago
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 10 months ago
• PapenfussLab / sv_benchmark
  Comprehensive benchmark of structural variant callers
  ☆48Updated 4 years ago
• mattravenhall / SV-Pop
  Upscaling SV detection to a multi-population level.
  ☆22Updated 2 months ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 6 years ago
• mobidic / knotAnnotSV
  A simple script to create a customizable html file from an AnnotSV output.
  ☆19Updated last year
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆58Updated last month