hall-lab / sv-pipelineLinks
Pipeline for structural variation detection in cohorts
☆49Updated 3 years ago
Alternatives and similar repositories for sv-pipeline
Users that are interested in sv-pipeline are comparing it to the libraries listed below
Sorting:
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Structural variant merging tool☆49Updated 9 months ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆35Updated 4 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- ☆40Updated 8 months ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 6 years ago
- ☆39Updated last year
- ☆22Updated 5 months ago
- Adapters for trimming☆30Updated 6 years ago
- Variant annotation and merging pipeline☆34Updated this week
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Structural variant caller☆54Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 2 months ago
- ☆51Updated 5 years ago
- BISulfite-seq CUI Toolkit☆19Updated 3 weeks ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Computes various SV statistics☆14Updated last year
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 11 months ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- Evaluation of phasing performance☆23Updated 7 years ago
- ☆46Updated 5 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago