Alternatives and similar repositories for MetacellAnalysisToolkit

Users that are interested in MetacellAnalysisToolkit are comparing it to the libraries listed below

• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆36Updated 2 weeks ago
• immunogenomics / starCAT
  Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs
  ☆23Updated last month
• swaruplabUCI / ArchRtoSignac
  An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
  ☆36Updated 10 months ago
• satijalab / Mixscale
  ☆19Updated 2 months ago
• PFPrzytycki / CellWalkR
  CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements
  ☆19Updated this week
• limin321 / stmut
  Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data
  ☆12Updated 8 months ago
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆52Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 4 months ago
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆20Updated 4 years ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆25Updated last week
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 8 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆27Updated 3 years ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆27Updated 3 months ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 5 years ago
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• mainciburu / WAT3R
  Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)
  ☆21Updated 2 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 2 years ago
• wenweixiong / MARVEL
  ☆49Updated 11 months ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated last year
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated last year
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆45Updated last year
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆50Updated 8 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆56Updated last year
• ventolab / cellphonedbviz
  Interactive visualisation of CellphoneDB results
  ☆10Updated 6 months ago
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• Teichlab / sctk
  ☆39Updated 9 months ago
• ajitjohnson / imsig
  Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours
  ☆27Updated 4 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 3 months ago
• PMBio / MuDataSeurat
  .h5mu files interface for Seurat
  ☆32Updated last year