GfellerLab / MetacellAnalysisToolkitLinks
Toolkit for metacell analysis
☆19Updated 9 months ago
Alternatives and similar repositories for MetacellAnalysisToolkit
Users that are interested in MetacellAnalysisToolkit are comparing it to the libraries listed below
Sorting:
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆15Updated last week
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆23Updated last week
- ☆18Updated last month
- An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)☆36Updated 9 months ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 11 months ago
- ☆49Updated 10 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 2 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆51Updated 2 years ago
- comprehensive analysis of single-cell transcriptomics data☆22Updated 2 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Landscape Single Cell Entropy☆21Updated 4 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- ☆23Updated 2 months ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- R package for analysing single cell data☆55Updated 2 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- ☆34Updated last year
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- ☆55Updated last year
- analysis script for GBM single cell RNA seq data☆18Updated 4 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆28Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 3 weeks ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- ☆29Updated 2 years ago
- ☆20Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- ☆41Updated 4 years ago