cantinilab / HuMMuS
Molecular interactions inference from single-cell multi-omics data
☆22Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for HuMMuS
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆18Updated 3 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆32Updated 2 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆40Updated last year
- ☆34Updated 6 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆34Updated 8 months ago
- Single cell omics biology annotations☆48Updated 2 months ago
- ☆23Updated 2 months ago
- Geometry-preserving random sampling☆75Updated 3 weeks ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆36Updated 2 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆30Updated 4 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆58Updated last week
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆56Updated 5 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- ☆48Updated 4 months ago
- ☆29Updated 2 years ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆46Updated 4 months ago
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- Multi-resolution Variational Inference☆22Updated last month
- ☆29Updated last year
- Functional Inference of Gene Regulation☆37Updated 4 months ago
- ☆37Updated 2 months ago
- Using TCR and expression for sequence embedding☆48Updated 2 weeks ago
- ☆12Updated 2 years ago
- ☆45Updated 2 weeks ago
- R package IReNA☆26Updated last week
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆24Updated last year