cantinilab / HuMMuS

Related projects: ⓘ

• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆30Updated 6 months ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆39Updated 2 years ago
• HYsxe / PRINT
  ☆31Updated 2 weeks ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆33Updated 2 months ago
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆22Updated 7 months ago
• morris-lab / BiddyetalWorkflow
  This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
  ☆30Updated 2 months ago
• UPSUTER / GEMLI
  ☆25Updated 3 weeks ago
• jiang-junyao / IReNA
  R package IReNA
  ☆26Updated 4 months ago
• lcmmichielsen / scHPL
  ☆34Updated 4 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆30Updated last year
• liulab-dfci / lisa2
  ☆28Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆45Updated this week
• ncborcherding / Trex
  Using TCR and expression for sequence embedding
  ☆47Updated 3 weeks ago
• wanglabtongji / SCRIP
  SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…
  ☆18Updated 2 months ago
• snehamitra / SCARlink
  ☆35Updated last week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆56Updated 4 months ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆38Updated last year
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆17Updated 8 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆38Updated 6 months ago
• KChen-lab / METAFlux
  ☆38Updated 2 months ago
• noamteyssier / adpbulk
  pseudobulking on an AnnData object
  ☆23Updated last year
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆28Updated 4 months ago
• cellatlas / human
  ☆37Updated 3 weeks ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆17Updated last year
• xiaoyeye / TFvelo
  ☆39Updated 4 months ago
• PeterZZQ / CellPath
  ☆19Updated 2 years ago
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆15Updated 4 years ago
• UcarLab / AMULET
  A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
  ☆29Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆49Updated last month
• tgac-vumc / BLADE
  BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data
  ☆24Updated 5 months ago