cantinilab / HuMMuSLinks
Molecular interactions inference from single-cell multi-omics data
☆25Updated 2 weeks ago
Alternatives and similar repositories for HuMMuS
Users that are interested in HuMMuS are comparing it to the libraries listed below
Sorting:
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- Single cell omics biology annotations☆51Updated 2 months ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- ☆43Updated 7 months ago
- ☆35Updated 3 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 6 months ago
- pseudobulking on an AnnData object☆32Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated last year
- ☆27Updated 7 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- ☆25Updated 3 months ago
- .h5mu files interface for Seurat☆32Updated last year
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- ☆32Updated 5 months ago
- ☆35Updated 9 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆34Updated 2 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).☆21Updated 2 months ago
- Gene group activity utility functions for Scanpy☆78Updated 6 months ago
- A method for analyzing scATAC-seq experiments.☆31Updated 3 months ago
- Using TCR and expression for sequence embedding☆56Updated 4 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 4 years ago
- ☆44Updated this week
- ☆45Updated last year
- Code for scKINETICS (ISMB 2023)☆21Updated last year
- ACTIONet single-cell analysis framework☆41Updated 9 months ago