Alternatives and similar repositories for HuMMuS

Users that are interested in HuMMuS are comparing it to the libraries listed below

• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆30Updated this week
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆66Updated 5 months ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆39Updated 2 years ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆26Updated 8 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 8 months ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆30Updated 5 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 11 months ago
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆32Updated 2 months ago
• UPSUTER / GEMLI
  ☆32Updated 11 months ago
• ajaynadig / TRADEtools
  ☆35Updated 9 months ago
• HYsxe / PRINT
  ☆37Updated last year
• WanluLiuLab / scAtlasVAE
  ☆40Updated 6 months ago
• pinellolab / pychromVAR
  A python package for chromVAR
  ☆32Updated 2 years ago
• rajewsky-lab / spacemake
  ☆48Updated this week
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 3 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆24Updated last year
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated 2 weeks ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 3 months ago
• lhqing / ALLCools
  Toolkit for single-cell DNA methylation analysis.
  ☆45Updated 2 weeks ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 8 months ago
• wenweixiong / MARVEL
  ☆52Updated last year
• anders-biostat / MethSCAn
  Python package with CLI for the analysis of single cell methylation data.
  ☆18Updated last year
• cellatlas / human
  ☆44Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆31Updated 9 months ago
• jcao89757 / TESSA
  Mapping the Functional Landscape of TCR Repertoire
  ☆35Updated 4 years ago
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated last year
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆24Updated 3 months ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated 2 years ago
• lcmmichielsen / scHPL
  ☆37Updated 9 months ago