aristoteleo / Scribe-pyLinks
Regulatory networks with Direct Information in python
☆40Updated 2 years ago
Alternatives and similar repositories for Scribe-py
Users that are interested in Scribe-py are comparing it to the libraries listed below
Sorting:
- MultiMAP for integration of single cell multi-omics☆55Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- scRNAseq integration with triplet neural networks☆41Updated 3 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆63Updated last year
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆65Updated 5 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 3 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- ☆19Updated 4 years ago
- Low-dimensional Projection of Single Cell Velocity☆28Updated 3 years ago
- Regulatory networks with Direct Information☆17Updated 6 years ago
- ☆37Updated 10 months ago
- ACTIONet single-cell analysis framework☆44Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆27Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆53Updated last month
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 3 years ago
- Simulate single-cell RNA-SEQ data using the Splatter statistical framework but implemented in python. In addition, simulate doublet cells…☆28Updated 4 years ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆51Updated 11 months ago
- Information-based dimensionality reduction☆29Updated last year
- Fast motif matching in R☆46Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- Marker Selection by matching manifolds and elastic net☆23Updated last year