YosefLab / veloviLinks
☆40Updated 2 weeks ago
Alternatives and similar repositories for velovi
Users that are interested in velovi are comparing it to the libraries listed below
Sorting:
- ☆46Updated last year
- ☆26Updated 2 years ago
- Python implementation of the Slingshot pseudotime algorithm☆69Updated 2 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆67Updated 6 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated last year
- ☆30Updated 5 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 3 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Predict RNA velocity through deep learning☆71Updated 2 years ago
- Non-parametric density inference for single-cell analysis.☆74Updated 7 months ago
- CAST package☆41Updated last year
- ☆47Updated last year
- R implementation of GeneTrajectory☆69Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆20Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated last year
- Gene group activity utility functions for Scanpy☆99Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆69Updated 2 months ago
- ☆46Updated 5 months ago
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆23Updated 2 years ago
- Multi-omic velocity inference☆113Updated last year
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆43Updated 3 months ago
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Updated 7 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆34Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆45Updated 4 months ago
- ☆52Updated 3 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆62Updated 4 months ago
- ☆21Updated 3 months ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆26Updated last year