☆41Jan 12, 2026Updated last month
Alternatives and similar repositories for velovi
Users that are interested in velovi are comparing it to the libraries listed below
Sorting:
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Oct 31, 2024Updated last year
- Predict RNA velocity through deep learning☆72Dec 12, 2023Updated 2 years ago
- ☆47May 4, 2024Updated last year
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- CellRank: dynamics from multi-view single-cell data☆430Updated this week
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆13Dec 27, 2023Updated 2 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- ☆13Mar 29, 2024Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆29Oct 24, 2024Updated last year
- R package for generalized binary covariance decomposition.☆14Jul 13, 2025Updated 7 months ago
- ☆16Sep 1, 2023Updated 2 years ago
- GREAT algorithm in Python☆14Oct 24, 2022Updated 3 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆85Mar 20, 2025Updated 11 months ago
- ☆62Dec 8, 2025Updated 2 months ago
- CAST package☆42Oct 26, 2024Updated last year
- Multi-modal single cell analysis pipelines☆62Dec 11, 2025Updated 2 months ago
- RNA Velocity generalized through dynamical modeling☆488Updated this week
- ☆32Feb 22, 2026Updated last week
- Estimation of Single-Cell Potency with Single Cell Entropy☆45Apr 12, 2023Updated 2 years ago
- The benchmarking of spatial transcriptomics deconvolution methods☆34Feb 24, 2023Updated 3 years ago
- Reference mapping for single-cell genomics☆399Dec 2, 2025Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- rapids_singlecell: GPU-accelerated framework for scRNA analysis☆300Feb 23, 2026Updated last week
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Aug 30, 2024Updated last year
- ☆31May 4, 2025Updated 9 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆127Nov 24, 2025Updated 3 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated last year
- LIANA+: an all-in-one framework for cell-cell communication☆271Jan 24, 2026Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆83Aug 10, 2025Updated 6 months ago
- R tools for analysis and visualization of single-cell subclustering data☆17Sep 9, 2025Updated 5 months ago
- Single cell trajectory detection☆297Feb 14, 2026Updated 2 weeks ago
- ☆32Jul 29, 2025Updated 7 months ago
- Non-parametric density inference for single-cell analysis.☆73May 22, 2025Updated 9 months ago
- ☆20Jul 16, 2024Updated last year
- ☆52Mar 23, 2025Updated 11 months ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆31May 20, 2025Updated 9 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated last year
- A modular tool for proportion analysis in single-cell sequencing data☆24Sep 19, 2025Updated 5 months ago