Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
☆26Jan 11, 2023Updated 3 years ago
Alternatives and similar repositories for TraSig
Users that are interested in TraSig are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆28Jul 5, 2020Updated 5 years ago
- This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data☆23Jan 22, 2018Updated 8 years ago
- ☆20Jan 16, 2026Updated 2 months ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆44Oct 10, 2025Updated 5 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 5 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆10Jan 23, 2023Updated 3 years ago
- Interactive software tool for the assignment of cell types in single-cell studies.☆33Apr 14, 2023Updated 2 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- Spatial direct messaging detected by bivariate Moran☆31Jul 16, 2025Updated 8 months ago
- Multi-omics multi-layered network integration and interpretation☆14Oct 15, 2024Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆128Mar 9, 2026Updated 2 weeks ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆26Feb 2, 2026Updated last month
- Mapping pipeline for snmC-seq based technologies.☆20Sep 25, 2023Updated 2 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆13Dec 27, 2023Updated 2 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆16Feb 25, 2019Updated 7 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated last month
- Gene Expression Decomposition and Integration☆19Feb 9, 2026Updated last month
- ☆15Feb 28, 2022Updated 4 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆248Jan 16, 2026Updated 2 months ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- Decoding the functional networks of non-model organisms☆12Mar 11, 2026Updated last week
- ☆21Dec 23, 2024Updated last year
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- ☆10Sep 27, 2022Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆45Sep 3, 2025Updated 6 months ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Aug 17, 2023Updated 2 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- mutation(barcode) caller for 10x single cell data☆44Jun 14, 2020Updated 5 years ago
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- Functional Inference of Gene Regulation☆52Jul 5, 2024Updated last year
- Single cell typing based on cell ontology☆54Dec 10, 2023Updated 2 years ago
- Multiview Intercellular SpaTial modeling framework☆72Jan 15, 2026Updated 2 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Code and example of the D-SPIN framework☆24Mar 12, 2026Updated last week