doraadong / TraSigLinks
Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
☆25Updated 2 years ago
Alternatives and similar repositories for TraSig
Users that are interested in TraSig are comparing it to the libraries listed below
Sorting:
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 2 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- ☆29Updated 2 years ago
- ☆26Updated last year
- Single-cell Case Control Analysis☆52Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆20Updated last year
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆37Updated 2 years ago
- Parse ArchR arrow files to anndata h5ad☆14Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆41Updated this week
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 11 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated last week
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- ☆56Updated last year
- ☆29Updated 5 months ago
- ☆21Updated 3 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- ☆37Updated 2 months ago
- ☆35Updated 5 months ago
- Neural Crest Fate Decisions☆11Updated 6 years ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆16Updated 3 years ago