doraadong / TraSig
Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
☆24Updated last year
Related projects: ⓘ
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Updated 2 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆39Updated 2 years ago
- ☆19Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆30Updated 6 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆45Updated 11 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆22Updated 7 months ago
- RNA velocity validation☆23Updated 2 years ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Updated 7 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆36Updated 2 months ago
- Mosaic single cell data integration using non-overlapping features☆34Updated last year
- Information-based dimensionality reduction☆29Updated 3 weeks ago
- ☆16Updated 2 weeks ago
- ☆34Updated 4 months ago
- ☆26Updated 8 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆19Updated 3 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 8 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆27Updated 3 months ago
- Functional Inference of Gene Regulation☆33Updated 2 months ago
- Single cell omics biology annotations☆45Updated this week
- Quasilinear data representations for single-cell omics data analysis☆42Updated last year
- scVI extension for unspliced RNA☆16Updated last week
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆43Updated 2 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆18Updated last month
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆30Updated 2 months ago
- cTPnet Package☆23Updated 2 years ago
- ☆10Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆33Updated last year
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆38Updated 6 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆41Updated 2 years ago
- Identifying external communication signals using single-cell transcriptomics data☆17Updated 3 months ago