Benchmark of GRNs using the GRETA pipeline
☆33Jun 9, 2026Updated 3 months ago
Alternatives and similar repositories for greta
Users that are interested in greta are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Context specific and dynamic gene regulatory network reconstruction and analysis☆132Aug 3, 2026Updated last month
- Molecular interactions inference from single-cell multi-omics data☆33May 7, 2026Updated 4 months ago
- Code for the analysis performed in the paper "Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromati…☆16Oct 16, 2025Updated 11 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆37Aug 15, 2026Updated last month
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆68Aug 10, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 7 months ago
- Multiome GRN inference.☆143Apr 10, 2026Updated 5 months ago
- Functional Inference of Gene Regulation☆55Jul 5, 2024Updated 2 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Jun 20, 2023Updated 3 years ago
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆12Sep 1, 2026Updated 3 weeks ago
- Causal discovery of gene regulatory programs from single-cell genomics☆23Sep 5, 2025Updated last year
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆25Feb 24, 2025Updated last year
- ☆10Apr 28, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Gene regulatory network containing signed transcription factor-target gene interactions☆121Aug 24, 2026Updated 3 weeks ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆36May 23, 2026Updated 3 months ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Sep 3, 2026Updated 2 weeks ago
- Transcription Factor Motif Instance Neighborhood Decomposition and Interpretation☆26Sep 11, 2026Updated last week
- Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior☆34Mar 14, 2025Updated last year
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Jul 11, 2025Updated last year
- Graphical modelling with time series data using an ODE model☆12Mar 28, 2022Updated 4 years ago
- Single-cell perturbation analysis☆346Updated this week
- Parse ArchR arrow files to anndata h5ad☆16Dec 14, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated last month
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆24Jan 16, 2024Updated 2 years ago
- This is the alpha version of the CellOracle package☆500Apr 30, 2026Updated 4 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆199Aug 24, 2026Updated 3 weeks ago
- Python package to perform enrichment analysis from omics data.☆294Updated this week
- Python client for the OmniPath web service☆62Feb 19, 2026Updated 7 months ago
- One interface to nine genomic deep-learning oracles — variant effect prediction, calibrated per-track percentiles, and plain-English anal…☆65Aug 28, 2026Updated 3 weeks ago
- ☆15Jan 14, 2025Updated last year
- A python package for chromVAR☆35May 1, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 6, 2026Updated 2 months ago
- R package for Empirical Bayes Factor Analysis.☆54Dec 4, 2024Updated last year
- The official repository for the ARSENAL model☆20Jul 3, 2026Updated 2 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- Regulatory networks with Direct Information in python☆42Mar 9, 2023Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆93Jul 28, 2026Updated last month
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated 2 years ago