saezlab / gretaLinks
Benchmark of GRNs using the GRETA pipeline
☆26Updated this week
Alternatives and similar repositories for greta
Users that are interested in greta are comparing it to the libraries listed below
Sorting:
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated 3 weeks ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 6 months ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated 2 months ago
- Geometry-preserving random sampling☆89Updated 9 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆70Updated last week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆120Updated 3 weeks ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated this week
- A method for analyzing scATAC-seq experiments.☆33Updated last month
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆39Updated 2 weeks ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Single cell omics biology annotations☆51Updated 3 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 11 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆40Updated 10 months ago
- pseudobulking on an AnnData object☆32Updated 4 months ago
- ACTIONet single-cell analysis framework☆42Updated 10 months ago
- Tools for sgRNA calling in direct capture Perturb-seq data☆36Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated 2 months ago
- Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.☆51Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆85Updated 2 months ago
- A python package for chromVAR☆28Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆53Updated 9 months ago
- Non-parametric density inference for single-cell analysis.☆72Updated 2 months ago
- ☆27Updated 4 months ago
- Code for Universal Single-Cell Matching with Unpaired Feature Sets☆21Updated 4 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆41Updated 2 years ago