☆37Jun 8, 2026Updated this week
Alternatives and similar repositories for TRADEtools
Users that are interested in TRADEtools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- ☆28Mar 12, 2026Updated 3 months ago
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 5 months ago
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆22Apr 27, 2025Updated last year
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 10 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆134May 5, 2025Updated last year
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆39May 27, 2026Updated 2 weeks ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 11 months ago
- Repository for the clone2vec python package☆23May 6, 2026Updated last month
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated 11 months ago
- ☆129Updated this week
- Factorize-Recover for Perturb-seq analysis (FR-Perturb)☆25Nov 4, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆12Nov 2, 2023Updated 2 years ago
- ☆67Apr 22, 2026Updated last month
- ☆12Oct 4, 2021Updated 4 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Code for the paper "MetaQ: fast, scalable and accurate metacell inference via deep single-cell quantization"☆28Dec 7, 2024Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆42Nov 18, 2021Updated 4 years ago
- ☆26Dec 25, 2023Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- ☆15Mar 15, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆30Mar 18, 2022Updated 4 years ago
- 🏃 The go-to single-cell Foundation Model☆148May 20, 2026Updated 3 weeks ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated last year
- Deposited codes for snMultiome in human cortex manuscript☆13Aug 12, 2024Updated last year
- RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms☆10Sep 22, 2021Updated 4 years ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated 2 months ago
- Drug Response Estimation from single-cell Expression Profiles☆13Jan 5, 2024Updated 2 years ago
- CellWalkR: An R Package for integrating single-cell and bulk data to resolve regulatory elements☆22Oct 8, 2025Updated 8 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Framework for sensitive DE testing (using neighbourhoods)☆78Nov 11, 2025Updated 7 months ago
- ☆15Apr 11, 2024Updated 2 years ago
- Code and data sharing of Liu et al. 2023 manuscript☆17Apr 18, 2023Updated 3 years ago
- This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.☆11Jan 21, 2024Updated 2 years ago
- An accurate and efficient colocalization method accounting for multiple causal signals☆14Jun 3, 2024Updated 2 years ago
- GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations☆368Feb 1, 2025Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆41Jun 18, 2023Updated 2 years ago