cistrome / MIRALinks
Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
☆64Updated 3 months ago
Alternatives and similar repositories for MIRA
Users that are interested in MIRA are comparing it to the libraries listed below
Sorting:
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated this week
- Single cell omics biology annotations☆51Updated 5 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated last week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 9 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Multi-omic velocity inference☆111Updated 11 months ago
- ☆36Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 7 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆76Updated 3 weeks ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 4 months ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated 3 weeks ago
- Functional Inference of Gene Regulation☆46Updated last year
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated last month
- Quasilinear data representations for single-cell omics data analysis☆43Updated 2 years ago
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 4 years ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated this week
- ☆56Updated 7 years ago
- Predict RNA velocity through deep learning☆70Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆40Updated 2 months ago
- Gene group activity utility functions for Scanpy☆91Updated 9 months ago
- Geometry-preserving random sampling☆89Updated 11 months ago
- ☆26Updated 4 years ago
- R implementation of GeneTrajectory☆65Updated last year
- Tools used in Human Cell Landscape(HCL)☆55Updated 5 years ago
- ☆54Updated 11 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago