cistrome / MIRALinks
Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
☆64Updated 2 months ago
Alternatives and similar repositories for MIRA
Users that are interested in MIRA are comparing it to the libraries listed below
Sorting:
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated last week
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 3 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated last year
- Single cell omics biology annotations☆51Updated 5 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated 2 weeks ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 8 months ago
- Quasilinear data representations for single-cell omics data analysis☆42Updated 2 years ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 7 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆74Updated last month
- ☆36Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆77Updated 7 months ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Updated this week
- Geometry-preserving random sampling☆89Updated 10 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 3 months ago
- Benchmark of GRNs using the GRETA pipeline☆28Updated last week
- Tools used in Human Cell Landscape(HCL)☆55Updated 5 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- inferring regulatory cellular dynamics☆56Updated this week
- Single-Cell Clustering Assessment Framework☆105Updated last year
- R implementation of GeneTrajectory☆65Updated last year
- Mapping the Functional Landscape of TCR Repertoire☆34Updated 3 years ago
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆27Updated 6 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- ☆56Updated 7 years ago
- Non-parametric density inference for single-cell analysis.☆72Updated 3 months ago
- ACTIONet single-cell analysis framework☆42Updated last year
- ☆55Updated 4 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆39Updated 2 months ago