Alternatives and similar repositories for CMScaller:

Users that are interested in CMScaller are comparing it to the libraries listed below

• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 9 months ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆28Updated 6 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆29Updated 9 months ago
• DongqiangZeng0808 / TMEscore
  Calculating Tumor microenvironment score
  ☆28Updated 2 years ago
• TransBioInfoLab / TNBC_analysis
  Code to reproduce TNBC analysis and figures
  ☆23Updated 2 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆43Updated last year
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 3 years ago
• federicogiorgi / corto
  corto (Correlation Tool): an R package to generate correlation-based DPI networks
  ☆20Updated 2 years ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆45Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆44Updated last year
• icbi-lab / quanTIseq
  a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data
  ☆18Updated 3 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆40Updated 3 weeks ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆24Updated 3 years ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆33Updated last year
• McGranahanLab / TcellExTRECT
  ☆47Updated 2 months ago
• CostaLab / scrna_seurat_pipeline
  comprehensive analysis of single-cell transcriptomics data
  ☆20Updated last week
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 2 years ago
• zhengtaoxiao / Single-Cell-Metabolic-Landscape
  Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data
  ☆22Updated 3 years ago
• OSU-BMBL / scread-protocol
  ☆16Updated 2 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆35Updated last year
• molgenis / scRNA-seq
  ☆18Updated last year
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆27Updated last year
• dosorio / rPanglaoDB
  An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.
  ☆26Updated last year
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆19Updated last year
• adoostparast / CellR
  CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
  ☆17Updated 3 years ago
• andygxzeng / AMLHierarchies
  Analysis notebooks and data for AML hierarchies paper
  ☆16Updated last year
• shendurelab / single-cell-ko-screens
  Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…
  ☆26Updated 3 years ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• Gibbsdavidl / Immune-Subtype-Clustering
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆18Updated 5 years ago