sunhuaibo / Sun_bio
☆13Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for Sun_bio
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- Package for calculation of Homologous Recombination Deficiency☆13Updated 4 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated 4 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆20Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆29Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆18Updated 5 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆21Updated 4 years ago
- cnv-seq with custom bugfix☆11Updated 11 years ago
- ☆23Updated last year
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- ☆11Updated last year
- bioinformatics R test code☆13Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 4 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- cfSNV: An R tool of sensitively detecting tumor mutations from cell-free DNA in blood☆10Updated last year
- RAGE-seq scripts☆18Updated 3 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆9Updated 2 years ago
- ☆10Updated 3 weeks ago
- ☆22Updated 3 months ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆13Updated 9 years ago
- ☆18Updated 6 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 2 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆20Updated last year