sunhuaibo / Sun_bioLinks
☆13Updated last year
Alternatives and similar repositories for Sun_bio
Users that are interested in Sun_bio are comparing it to the libraries listed below
Sorting:
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- ☆19Updated 7 years ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Updated 3 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 3 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated 2 months ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Updated 5 years ago
- Arabidopsis RNA_-seq downstream analysis shiny app☆30Updated 6 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 6 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated last week
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- A detailed guide to analise and integrate small-RNASeq and RNASeq samples using miARma-Seq☆11Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- ☆25Updated 3 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.☆17Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- cfSNV: An R tool of sensitively detecting tumor mutations from cell-free DNA in blood☆14Updated 2 years ago
- RNA editing tests☆17Updated 5 years ago