Alternatives and similar repositories for ContactTracing_tutorial

Users that are interested in ContactTracing_tutorial are comparing it to the libraries listed below

• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆55Updated 2 years ago
• gxiaolab / scAllele
  ☆39Updated last month
• data2intelligence / CytoSig_prediction
  Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts
  ☆14Updated 2 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 7 months ago
• XZouProjects / scCODE
  The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data
  ☆14Updated last year
• shanzha9 / siAgeModel
  ☆12Updated last year
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆39Updated 4 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆28Updated 3 years ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 6 months ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• McGranahanLab / ImmuneLENS
  ☆15Updated 7 months ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated last year
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆13Updated last year
• satijalab / Mixscale
  ☆20Updated 2 weeks ago
• xichensf / magical
  R and MATLAB scripts for MAGICAL
  ☆11Updated last year
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆17Updated last month
• CyrilLagger / scDiffCom
  Difference in Intercellular Communication from scRNA-seq data
  ☆22Updated last week
• wenweixiong / MARVEL
  ☆51Updated last year
• gabrielakinker / CCLE_heterogeneity
  ☆59Updated last year
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆16Updated 10 months ago
• ventolab / Human-Gonadal-Development-Atlas_HGDA
  ☆21Updated 10 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 6 months ago
• soumelis-lab / ICELLNET
  ☆20Updated 3 months ago
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆20Updated 5 years ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆34Updated 11 months ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• WanluLiuLab / scAtlasVAE
  ☆38Updated 4 months ago
• lueckenlab / single-cell-papers-trends
  Trends in single cell papers
  ☆16Updated last year
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆13Updated 3 years ago