LaughneyLab / ContactTracing_tutorialLinks
☆17Updated 9 months ago
Alternatives and similar repositories for ContactTracing_tutorial
Users that are interested in ContactTracing_tutorial are comparing it to the libraries listed below
Sorting:
- cell type deconvolution for multi-condition bulk RNA-seq data☆26Updated 3 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆13Updated last year
- ☆16Updated 4 years ago
- Code used to process the data of the HBCA project☆27Updated last year
- ☆15Updated 3 years ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆11Updated 8 months ago
- Computational pipeline to process EasySci-RNA data.☆20Updated last year
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- ☆18Updated 2 months ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago
- ☆49Updated 10 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆26Updated 3 years ago
- ☆10Updated 2 years ago
- ☆16Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 6 months ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆15Updated 6 months ago
- Ordering gene-expression and functional events in single-cell experiments☆22Updated last year
- Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…☆22Updated 3 years ago
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Updated 3 months ago
- Single-Cell Inference of Class Switch Recombination☆19Updated 2 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- ☆34Updated last year
- ☆13Updated 7 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 3 weeks ago
- ☆10Updated 8 months ago
- ☆9Updated 11 months ago
- Lung cancer 10X analysis☆11Updated 4 years ago
- ☆12Updated last year