KChen-lab / SCMarkerLinks
Marker gene selection from scRNA-seq data
☆15Updated 5 years ago
Alternatives and similar repositories for SCMarker
Users that are interested in SCMarker are comparing it to the libraries listed below
Sorting:
- ☆12Updated 6 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- Landscape Single Cell Entropy☆21Updated 5 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Single-cell Case Control Analysis☆52Updated 3 weeks ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 5 years ago
- ☆43Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 6 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- ☆15Updated last year
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆44Updated 4 months ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆17Updated 6 years ago
- ☆39Updated 4 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- scWGCNA☆61Updated 3 years ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 4 years ago
- Ordering gene-expression and functional events in single-cell experiments☆28Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago