KChen-lab / SCMarkerLinks
Marker gene selection from scRNA-seq data
☆15Updated 5 years ago
Alternatives and similar repositories for SCMarker
Users that are interested in SCMarker are comparing it to the libraries listed below
Sorting:
- Single-cell Case Control Analysis☆52Updated 2 weeks ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- ☆12Updated 6 years ago
- Landscape Single Cell Entropy☆21Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 4 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Mosaic single cell data integration using non-overlapping features☆37Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 7 months ago
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Updated 3 years ago
- Single-cell Orientation Tracing☆21Updated 3 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- single nuclei RNA-seq analysis toolbox☆10Updated 9 years ago
- ☆43Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Differential expression analysis for single-cell RNA-seq data☆14Updated 6 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile☆21Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Ordering gene-expression and functional events in single-cell experiments☆25Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆20Updated 4 months ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago