Marker gene selection from scRNA-seq data
☆16Sep 15, 2020Updated 5 years ago
Alternatives and similar repositories for SCMarker
Users that are interested in SCMarker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An algorithm used to classify the cell types from single cell rna sequence data.☆10Jan 24, 2021Updated 5 years ago
- Simple App to visualize single cell datasets☆20Apr 12, 2018Updated 7 years ago
- ☆18Jun 13, 2019Updated 6 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Jul 8, 2019Updated 6 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Mar 27, 2021Updated 4 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Dec 26, 2022Updated 3 years ago
- Telomerecat: The telomere computational analysis tool☆14Oct 9, 2020Updated 5 years ago
- ☆16Jul 9, 2024Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Dec 15, 2021Updated 4 years ago
- ☆15Oct 19, 2023Updated 2 years ago
- Trajectory inference and differential expression over multiple conditions in scRNA-seq☆26Apr 22, 2021Updated 4 years ago
- ☆15Nov 9, 2018Updated 7 years ago
- Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced cou…☆19Sep 29, 2025Updated 5 months ago
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆20Feb 24, 2024Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Oct 22, 2024Updated last year
- Pipeline of tools to process raw fastq data and produce meaningful genomic data☆14Feb 20, 2020Updated 6 years ago
- UNCURL is a tool for single cell RNA-seq data analysis.☆15Jun 27, 2022Updated 3 years ago
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 5 years ago
- SCCNV: a software tool for identifying copy number variation from single-cell whole-genome sequencing☆13Jul 21, 2020Updated 5 years ago
- MuDCoD: Multi-subject Dynamic Community Detection☆11Mar 18, 2025Updated last year
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆47May 13, 2016Updated 9 years ago
- Vaeda method for computational doublet annotation☆19Feb 1, 2026Updated last month
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated last year
- ☆18Oct 22, 2024Updated last year
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Jul 28, 2025Updated 7 months ago
- ☆12Jul 13, 2018Updated 7 years ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Jul 22, 2024Updated last year
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆24Dec 3, 2025Updated 3 months ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆102Jul 19, 2021Updated 4 years ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Sep 23, 2020Updated 5 years ago
- Single-cell RNA-seq analysis from "Single cell transcriptomics reveals spatial and temporal dynamics of gene expression in the developing…☆26May 12, 2020Updated 5 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- Cytoscape app that clusters a given network based on topology to find densely connected regions☆10Jun 28, 2023Updated 2 years ago
- Tutorials for multimodal omics data analysis☆19Feb 28, 2025Updated last year
- .h5mu files interface for Seurat☆33Nov 28, 2023Updated 2 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- scRNAseq integration with triplet neural networks☆41Feb 2, 2026Updated last month
- Automated cell filtering for single-cell RNA sequencing data☆26Nov 14, 2023Updated 2 years ago