sjdlabgroup / CensusLinks
Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation
☆14Updated last year
Alternatives and similar repositories for Census
Users that are interested in Census are comparing it to the libraries listed below
Sorting:
- A pipeline for scRNA-seq data analysis☆15Updated 10 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Updated 9 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated 2 years ago
- ☆50Updated 6 years ago
- A R package for advanced single cell data viz☆73Updated 5 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆33Updated 2 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- scWGCNA☆61Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Updated 3 years ago
- ☆33Updated last year
- R package for robust clustering of single cell RNA sequencing data☆36Updated last year
- Gene set enrichment analysis for single-cell RNAseq data☆31Updated 2 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆66Updated 4 years ago
- Inferring CNV data from single cell ATAC seq☆25Updated 7 months ago
- ☆18Updated last year
- ☆25Updated 3 months ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Updated 2 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Updated last week
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- ☆15Updated last year
- Code repository for single cell RNA-seq☆40Updated 5 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.☆21Updated 3 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Updated 5 months ago
- SCDC☆46Updated 7 months ago