sjdlabgroup / CensusLinks
Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation
☆14Updated last year
Alternatives and similar repositories for Census
Users that are interested in Census are comparing it to the libraries listed below
Sorting:
- A pipeline for scRNA-seq data analysis☆15Updated 10 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Updated 9 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated last year
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆30Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆76Updated 5 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Updated 4 years ago
- A R package for advanced single cell data viz☆72Updated 5 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- ☆18Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 2 months ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- SCDC☆45Updated 7 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆44Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆38Updated 2 years ago
- ☆33Updated last year
- Methods for decontamination of single cell data☆55Updated 11 months ago
- ☆50Updated 6 years ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated 4 months ago
- ☆65Updated 6 years ago
- Inferring CNV data from single cell ATAC seq☆25Updated 7 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆68Updated last year
- Enrichment Networks for Pathway Enrichment Analysis☆67Updated 2 years ago
- ☆15Updated last year
- Code repository for single cell RNA-seq☆40Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year