Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation
☆14Jan 21, 2025Updated last year
Alternatives and similar repositories for Census
Users that are interested in Census are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The code for running the analysis component of CSI-Microbe☆12Jan 3, 2024Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆36Aug 7, 2023Updated 2 years ago
- ☆24Aug 2, 2024Updated last year
- Inferring CNV data from single cell ATAC seq☆26Jun 24, 2025Updated 9 months ago
- ☆18Jun 13, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆24Aug 15, 2023Updated 2 years ago
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆18Dec 3, 2025Updated 4 months ago
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆13Aug 23, 2022Updated 3 years ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆24Dec 3, 2025Updated 4 months ago
- Time-stratified case-crossover studies for aggregated data in environmental epidemiology: a tutorial☆12Jul 25, 2025Updated 8 months ago
- 使用表达数据，对候选基因进行特征选择，然后构建诊断/预后模型，并使用SHAP分析特征的贡献策划的怒☆16Oct 16, 2025Updated 5 months ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆12Apr 5, 2026Updated last week
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆319Nov 1, 2022Updated 3 years ago
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆37Jun 12, 2020Updated 5 years ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆13Dec 4, 2023Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Mar 25, 2024Updated 2 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆13Mar 23, 2024Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- R package to infer biological activities from omics data using a collection of methods.☆289Dec 16, 2025Updated 3 months ago
- Easy single cell analysis platform for enrichment☆218Apr 3, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆33Mar 18, 2026Updated 3 weeks ago
- High dimensional weighted gene co-expression network analysis☆469Mar 13, 2026Updated 3 weeks ago
- A library for viewing songbird brain atlases (European starling, Canary, Zebra finch, Pigeon, Mustached bat)☆23Sep 10, 2019Updated 6 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- ☆277Oct 13, 2025Updated 6 months ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- ☆13Feb 17, 2022Updated 4 years ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆633Mar 11, 2026Updated last month
- R package with modeling, forecasting, and early detection & early warning alerts code for EPIDEMIA forecasting reports. The Epidemic Prog…☆12Jan 20, 2021Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆28Sep 20, 2023Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆293Jun 17, 2025Updated 9 months ago
- Group Based Modeling Trajectory☆13Jun 8, 2025Updated 10 months ago
- ☆12Mar 19, 2026Updated 3 weeks ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 4 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆49Feb 9, 2024Updated 2 years ago
- R tools for analysis and visualization of single-cell subclustering data☆18Sep 9, 2025Updated 7 months ago