Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation
☆15Jan 21, 2025Updated last year
Alternatives and similar repositories for Census
Users that are interested in Census are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The code for running the analysis component of CSI-Microbe☆12Jan 3, 2024Updated 2 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆37Aug 7, 2023Updated 2 years ago
- Legacy repository for asc_seurat up to v2. For v3+ use github.com/Pereira-Lab-UF/asc_seurat☆24Updated this week
- Inferring CNV data from single cell ATAC seq☆28Jun 24, 2025Updated 10 months ago
- ☆18Jun 13, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Jan 6, 2021Updated 5 years ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆25Aug 15, 2023Updated 2 years ago
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆19Dec 3, 2025Updated 5 months ago
- Pipeline to calculate icSHAPE score in genome with sliding window strategy☆13Aug 23, 2022Updated 3 years ago
- popsicleR, a flexible R package aimed at providing most of the necessary quality controls and preliminary information for complete and de…☆25Dec 3, 2025Updated 5 months ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jan 23, 2026Updated 4 months ago
- Time-stratified case-crossover studies for aggregated data in environmental epidemiology: a tutorial☆12Jul 25, 2025Updated 9 months ago
- 使用表达数据，对候选基因进行特征选择，然后构建诊断/预后模型，并使用SHAP分析特征的贡献策划的怒☆17Oct 16, 2025Updated 7 months ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆13Apr 5, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆327Nov 1, 2022Updated 3 years ago
- An R framework for choosing clustering parameters in scRNA-seq analysis pipelines☆37Jun 12, 2020Updated 5 years ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆13Dec 4, 2023Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆36Mar 25, 2024Updated 2 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆15Mar 23, 2024Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Dec 22, 2022Updated 3 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Easy single cell analysis platform for enrichment☆225Apr 3, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package to infer biological activities from omics data using a collection of methods.☆295Dec 16, 2025Updated 5 months ago
- A library for viewing songbird brain atlases (European starling, Canary, Zebra finch, Pigeon, Mustached bat)☆23Sep 10, 2019Updated 6 years ago
- High dimensional weighted gene co-expression network analysis☆473Mar 13, 2026Updated 2 months ago
- ☆11Sep 7, 2023Updated 2 years ago
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- ☆14Feb 17, 2022Updated 4 years ago
- ☆284Oct 13, 2025Updated 7 months ago
- R package with modeling, forecasting, and early detection & early warning alerts code for EPIDEMIA forecasting reports. The Epidemic Prog…☆13Jan 20, 2021Updated 5 years ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆642Mar 11, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆28Sep 20, 2023Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 11 months ago
- Group Based Modeling Trajectory☆13Jun 8, 2025Updated 11 months ago
- ☆12Mar 19, 2026Updated 2 months ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆49Feb 9, 2024Updated 2 years ago
- This repository contains the source code for the tappAS application. See README for details.☆21Mar 9, 2026Updated 2 months ago