Alternatives and similar repositories for NetAct

Users that are interested in NetAct are comparing it to the libraries listed below

• gxiaolab / scAllele
  ☆39Updated 4 months ago
• wenweixiong / MARVEL
  ☆53Updated last year
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated 9 months ago
• UPSUTER / GEMLI
  ☆33Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated 2 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 3 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆17Updated 2 years ago
• McGranahanLab / TcellExTRECT
  ☆48Updated last year
• tuonglab / dandelionR
  Single-cell immune repertoire trajectory analysis in R
  ☆11Updated 5 months ago
• OscarGVelasco / ClusterFoldSimilarity
  Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
  ☆25Updated 9 months ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• jig4003 / Ragas
  R tools for analysis and visualization of single-cell subclustering data
  ☆17Updated 4 months ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆36Updated 2 years ago
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆18Updated last year
• BMILAB / scAPAtrap
  ☆25Updated 3 months ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆58Updated 3 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated 2 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆30Updated 3 years ago
• satijalab / Mixscale
  ☆23Updated 3 months ago
• mckellardw / scMuscle
  The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcri…
  ☆23Updated 3 years ago
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆33Updated last month
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated last week
• jyyulab / scMINER
  Single-cell Mutual Information-based Network Engineering Ranger
  ☆22Updated 4 months ago
• cbib / Seurat-Integrate
  R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…
  ☆31Updated 4 months ago
• prabhakarlab / DUBStepR
  Correlation-Based Feature Selection for Single-Cell RNA Sequencing Data
  ☆20Updated 3 years ago
• caleblareau / gchromVAR
  Cell type specific enrichments using finemapped variants and quantitative epigenetic data
  ☆47Updated 2 years ago