jlaffy / scalop
Single Cell Analysis Operations
☆13Updated 3 weeks ago
Alternatives and similar repositories for scalop:
Users that are interested in scalop are comparing it to the libraries listed below
- Construct Tumor Transition Zone Microenvironment☆42Updated 4 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated 6 months ago
- ☆30Updated 2 years ago
- ☆15Updated 2 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆62Updated 2 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆30Updated 2 years ago
- ☆29Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 5 months ago
- Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…☆54Updated 2 years ago
- ☆25Updated 9 months ago
- Spatial transcriptomics of heart tissue☆20Updated 2 years ago
- ☆45Updated 3 years ago
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆46Updated 3 years ago
- ☆44Updated last year
- R package for pathway analysis in scRNA-seq data☆72Updated 7 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆24Updated last month
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆97Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated 2 months ago
- ☆19Updated last year
- ☆39Updated 7 months ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆34Updated 4 years ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆56Updated 2 weeks ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 2 years ago
- Codes used in pan-T cell analysis☆54Updated 2 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆40Updated last year
- Accurate and fast cell marker gene identification with COSG☆43Updated last week
- Functions for single cell data analysis☆31Updated 3 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 10 months ago