jlaffy / scalop
Single Cell Analysis Operations
☆13Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for scalop
- Construct Tumor Transition Zone Microenvironment☆35Updated this week
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆59Updated last year
- ☆27Updated 2 years ago
- ☆42Updated 2 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 3 years ago
- Data available at: https://www.dropbox.com/sh/jh4s57kgbb0rnxe/AABoMK466cGc1OKsOuFN10wca?dl=0 and https://nyulangone-my.sharepoint.com//g/…☆26Updated 2 years ago
- ☆25Updated 9 months ago
- ☆18Updated 5 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆66Updated this week
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆40Updated 3 years ago
- Codes used in pan-T cell analysis☆49Updated last year
- ☆17Updated last year
- Method for de novo mutation calling from droplet based single cell RNA seq data☆12Updated 3 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆32Updated 3 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆21Updated 6 months ago
- ☆31Updated 8 months ago
- ☆19Updated 7 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated last month
- Estimation of Single-Cell Potency with Single Cell Entropy☆38Updated last year
- ☆17Updated 10 months ago
- HCC single cell analysis for Alvarez, Benhammou et al.☆16Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆91Updated 11 months ago
- R package for pathway analysis in scRNA-seq data☆62Updated 3 months ago
- R code used to analyze single cell PDAC data☆30Updated 4 months ago
- Functions for single cell data analysis☆27Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆25Updated 2 years ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- Senescent Cell Identification☆29Updated 8 months ago
- ☆12Updated last year
- ☆21Updated last week