Alternatives and similar repositories for RNA2CM

Users that are interested in RNA2CM are comparing it to the libraries listed below

• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆51Updated 5 months ago
• genemine / iread
  iread
  ☆25Updated 4 years ago
• HTGenomeAnalysisUnit / nf-pipeline-regenie
  GWAS and rare variants tests at high speed using regenie
  ☆15Updated 7 months ago
• caravagnalab / mobster
  Model-based subclonal deconvolution from bulk sequencing.
  ☆33Updated 7 months ago
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆16Updated last year
• yigbt / multiGSEA
  The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.
  ☆19Updated 3 months ago
• AlexsLemonade / scpca-nf
  scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
  ☆14Updated this week
• caravagnalab / CNAqc
  CNAqc - Copy Number Alteration (CNA) Quality Check package
  ☆22Updated 2 months ago
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 3 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆37Updated last year
• AlexandrovLab / TMB_plotter
  Python function for TMB snake plots
  ☆16Updated 5 years ago
• davemcg / awesome_genome_browsers
  ☆10Updated 6 years ago
• slowkow / cellguide
  🧭 Navigate single-cell RNA-seq datasets in your web browser.
  ☆29Updated 2 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆43Updated 3 years ago
• parklab / MSIprofiler
  Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data
  ☆20Updated last year
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆22Updated last year
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆19Updated 2 years ago
• beroukhim-lab / BISCUT-py3
  ☆12Updated last year
• danro9685 / ASCETIC
  ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…
  ☆11Updated 3 months ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated this week
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated 10 months ago
• KaiAragaki / tidyestimate
  ESTIMATE tumor infiltration, the tidy way
  ☆16Updated last year
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆33Updated last month
• sigven / pharmOncoX
  Targeted and non-targeted anticancer drugs and drug regimens
  ☆29Updated this week
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆12Updated 2 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 8 years ago
• trichelab / MTseeker
  mitochondrial variant analysis tools
  ☆14Updated 4 years ago