BostonGene / Kassandra
Bostongene cell deconvolution algorithm from RNAseq
☆51Updated last year
Alternatives and similar repositories for Kassandra:
Users that are interested in Kassandra are comparing it to the libraries listed below
- ☆60Updated 4 years ago
- Code repository for single cell RNA-seq☆34Updated 4 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 4 months ago
- ☆61Updated 8 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆71Updated 10 months ago
- scWGCNA☆56Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆73Updated 6 months ago
- ☆59Updated 5 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆43Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆60Updated 4 months ago
- Unified access to several second-generation deconvolution methods☆65Updated 3 weeks ago
- R package for Pathway RespOnsive GENe activity inference☆100Updated 2 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- ☆46Updated 2 years ago
- ☆39Updated 3 years ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆44Updated 2 months ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated last month
- ☆78Updated last year
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 11 months ago
- ☆53Updated 4 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆45Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆67Updated 5 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago