BostonGene / Kassandra

Related projects ⓘ

Alternatives and complementary repositories for Kassandra

• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆32Updated 4 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆41Updated 9 months ago
• KChen-lab / METAFlux
  ☆48Updated 4 months ago
• meichendong / SCDC
  SCDC
  ☆42Updated last year
• Coolgenome / iTALK
  ☆58Updated 5 years ago
• liulab-dfci / RIMA_pipeline
  ☆74Updated 10 months ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆36Updated 7 months ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆48Updated last week
• McGranahanLab / TcellExTRECT
  ☆46Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆46Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆43Updated 4 years ago
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆51Updated 2 years ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆31Updated last year
• cssmillie / ulcerative_colitis
  ☆59Updated 4 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆33Updated 5 years ago
• naef-lab / dryR
  Differential RhythmicitY analysis in R is an R package that provides the statistical framework to assess differential rhythmicity of a ti…
  ☆13Updated 9 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆55Updated 2 years ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆59Updated last year
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated 5 months ago
• bowmanr / scDNA_myeloid
  Processing scripts for single cell DNA sequencing on the Tapestri platform
  ☆24Updated last year
• BioinformaticsFMRP / PanCanStem_Web
  ☆30Updated 2 years ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆41Updated last month
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆93Updated last year
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆61Updated 2 years ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆40Updated 2 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆68Updated 2 months ago
• neurorestore / DE-analysis
  ☆37Updated 3 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆59Updated 4 years ago
• Teichlab / Pan_fetal_immune
  Collection of scripts for analysis of pan fetal immune atlas
  ☆25Updated 2 years ago