Alternatives and similar repositories for Kassandra

Users that are interested in Kassandra are comparing it to the libraries listed below

• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆111Updated 2 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆39Updated 5 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆92Updated 6 months ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆81Updated last year
• cssmillie / ulcerative_colitis
  ☆63Updated 5 years ago
• KChen-lab / METAFlux
  ☆80Updated last year
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆88Updated last week
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆67Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆47Updated last year
• liulab-dfci / RIMA_pipeline
  ☆89Updated 3 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• Coolgenome / iTALK
  ☆64Updated 6 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆57Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 8 months ago
• gabrielakinker / CCLE_heterogeneity
  ☆62Updated last year
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆90Updated last week
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆99Updated last year
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 4 months ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆36Updated 2 years ago
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆39Updated last month
• xiebb123456 / AutomaticCellTypeIdentification
  ☆19Updated 3 years ago
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆82Updated 8 months ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆102Updated last week
• ggjlab / HCL
  Tools used in Human Cell Landscape(HCL)
  ☆56Updated 5 years ago
• HetzDra / turboGliph
  R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…
  ☆26Updated 3 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆64Updated 3 years ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆41Updated 4 years ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• immunogenomics / starCAT
  Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs
  ☆90Updated 2 weeks ago