Alternatives and similar repositories for Kassandra:

Users that are interested in Kassandra are comparing it to the libraries listed below

• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆100Updated 2 years ago
• cssmillie / ulcerative_colitis
  ☆60Updated 4 years ago
• liulab-dfci / RIMA_pipeline
  ☆78Updated last year
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆75Updated 6 months ago
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆84Updated 8 months ago
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• rpolicastro / scProportionTest
  ☆61Updated last year
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆62Updated 2 years ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆44Updated 2 months ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆34Updated 4 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆96Updated last year
• KChen-lab / METAFlux
  ☆61Updated 8 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆58Updated 2 years ago
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆53Updated last month
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆55Updated 4 months ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆66Updated 9 months ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆60Updated 2 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆73Updated 11 months ago
• HetzDra / turboGliph
  R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…
  ☆19Updated 2 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• AllonKleinLab / SPRING_dev
  ☆69Updated 11 months ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆60Updated 4 years ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆77Updated 2 years ago
• crazyhottommy / pyflow-cellranger
  A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data
  ☆16Updated 5 years ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆82Updated 8 months ago
• elimereu / matchSCore2
  ☆53Updated 4 years ago
• data2intelligence / CytoSig
  ☆49Updated 5 months ago
• TheHumphreysLab / plot1cell
  ☆104Updated 2 weeks ago
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago