wwylab / DeMixTLinks
☆36Updated 10 months ago
Alternatives and similar repositories for DeMixT
Users that are interested in DeMixT are comparing it to the libraries listed below
Sorting:
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- ☆40Updated 7 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Explore the cancer relevance of your gene list☆51Updated 3 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- binned motif enrichment analysis and visualisation☆40Updated last month
- ☆41Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- ☆29Updated 6 years ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated last month
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆21Updated 3 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- R/Bioconductor package for working with 10x scATACseq data☆40Updated last year
- SCASA: Single cell transcript quantification tool☆21Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Identify and correct invalid gene symbols☆58Updated 6 months ago
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- Bead-based single-cell atac processing☆33Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 5 years ago
- ☆12Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆24Updated 2 years ago
- GLASS consortium☆13Updated 3 years ago