☆65Aug 2, 2019Updated 6 years ago
Alternatives and similar repositories for iTALK
Users that are interested in iTALK are comparing it to the libraries listed below
Sorting:
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆86Oct 6, 2023Updated 2 years ago
- A R package for advanced single cell data viz☆73Aug 29, 2025Updated 6 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆49Apr 21, 2025Updated 10 months ago
- Accurate and fast cell marker gene identification with COSG☆62Feb 8, 2026Updated 3 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆620Nov 12, 2025Updated 3 months ago
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆14Nov 9, 2023Updated 2 years ago
- R package for Bioconductor submission☆38Dec 8, 2022Updated 3 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆765Jan 6, 2024Updated 2 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆54Jan 21, 2026Updated last month
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆324Apr 23, 2024Updated last year
- ☆360Dec 9, 2021Updated 4 years ago
- Community-provided extensions to Seurat☆358Feb 17, 2026Updated 2 weeks ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆477Apr 5, 2024Updated last year
- ☆47Apr 18, 2020Updated 5 years ago
- Quantifying metabolism activity at the single-cell resolution☆153Feb 18, 2026Updated 2 weeks ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 2 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆66Jul 26, 2021Updated 4 years ago
- scAB detects multiresolution cell states with clinical significance☆20Nov 14, 2022Updated 3 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆276Jan 3, 2026Updated 2 months ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11May 25, 2023Updated 2 years ago
- Bayesian network plot for the enrichment analysis results☆67Oct 2, 2024Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆117Apr 26, 2025Updated 10 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Dec 2, 2020Updated 5 years ago
- RNA velocity estimation in R☆194Sep 14, 2023Updated 2 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆238May 8, 2023Updated 2 years ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- Comprehensive Single-Cell Annotation and Transcriptomic Analysis Toolkit☆13Oct 3, 2025Updated 5 months ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- An R package for time course sequencing data analysis☆21May 8, 2023Updated 2 years ago
- ☆23Jul 9, 2025Updated 7 months ago
- Network construction Algorithm☆22Sep 5, 2024Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆315Nov 1, 2022Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Feb 28, 2022Updated 4 years ago
- Methods for detecting doublets in single-cell sequencing data☆231Feb 12, 2026Updated 3 weeks ago
- Codes for the scPLC project☆74Dec 2, 2022Updated 3 years ago
- scDataviz: single cell dataviz and downstream analyses☆66Sep 24, 2021Updated 4 years ago
- A computational method for inferring cell-cell communication signaling networks using single-cell transcriptomics data.☆21Dec 29, 2025Updated 2 months ago
- Useful functions to make your scRNA-seq plot more cool!☆374Dec 24, 2025Updated 2 months ago
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆150Jan 20, 2023Updated 3 years ago