☆70Aug 2, 2019Updated 7 years ago
Alternatives and similar repositories for iTALK
Users that are interested in iTALK are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆91Oct 6, 2023Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- A R package for advanced single cell data viz☆74Aug 29, 2025Updated last year
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 3 years ago
- R package for Bioconductor submission☆41Dec 8, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The R package scCODE, a platform for data-specific DE gene detection for scRNA-seq data☆15Nov 9, 2023Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆790Jan 6, 2024Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆67Aug 25, 2026Updated 2 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- NicheNet: predict active ligand-target links between interacting cells☆684Oct 23, 2026Updated last week
- ☆27Jul 9, 2025Updated last year
- Single Cell RNA Intron-Exon counting☆12May 7, 2020Updated 6 years ago
- ☆363Dec 9, 2021Updated 4 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆65Jul 26, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Cell Interaction by Multiplet Sequencing (CIM-Seq) uses computational deconvolution of RNA-seq data from partially dissociated tissue to …☆11Jan 20, 2022Updated 4 years ago
- A computational method for inferring cell-cell communication signaling networks using single-cell transcriptomics data.☆21Dec 29, 2025Updated 10 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆501Apr 5, 2024Updated 2 years ago
- ☆12Jun 29, 2025Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆38Jul 1, 2024Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆37Apr 13, 2021Updated 5 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆297Updated this week
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆35Aug 16, 2021Updated 5 years ago
- Community-provided extensions to Seurat☆372Oct 8, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆25Aug 5, 2025Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆76Dec 2, 2020Updated 5 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆36Sep 14, 2026Updated last month
- Quantifying metabolism activity at the single-cell resolution☆201Aug 20, 2026Updated 2 months ago
- Enrichment Networks for Pathway Enrichment Analysis☆76Apr 14, 2023Updated 3 years ago
- ☆10May 31, 2023Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆37Feb 28, 2022Updated 4 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 11 months ago
- scDataviz: single cell dataviz and downstream analyses☆68Sep 24, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bayesian network plot for the enrichment analysis results☆68Oct 2, 2024Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆127Apr 26, 2025Updated last year
- R package for Pathway RespOnsive GENe activity inference☆130Jan 30, 2023Updated 3 years ago
- ImmuCellAI (Immune Cell Abundance Identifier) is a tool to estimate the abundance of 24 immune cells from gene expression dataset includi…☆19May 25, 2025Updated last year
- scGSVA: Perform GSVA for single cell RNA seq☆88Sep 5, 2026Updated last month
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆53Jan 21, 2026Updated 9 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆43May 24, 2026Updated 5 months ago