Coolgenome / iTALK
☆59Updated 5 years ago
Alternatives and similar repositories for iTALK:
Users that are interested in iTALK are comparing it to the libraries listed below
- Inference of cell-cell communication from single-cell RNAseq data☆47Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆77Updated last year
- ☆60Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆70Updated 4 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆92Updated last year
- Mollecular Functional Portraits☆36Updated 9 months ago
- A R package for advanced single cell data viz☆62Updated last year
- simpler single cell RNAseq data clustering☆40Updated 7 months ago
- R package for Pathway RespOnsive GENe activity inference☆98Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 4 years ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆60Updated 2 years ago
- R Package for Single-Cell Dataset Processing and Visualization☆61Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 4 months ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆52Updated 2 months ago
- Code repository for single cell RNA-seq☆33Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆49Updated 3 months ago
- Functions for single cell data analysis☆29Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 4 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆93Updated last year
- Mouse cell atlas☆60Updated 4 years ago
- Senescent Cell Identification☆30Updated 10 months ago
- R package for pathway analysis in scRNA-seq data☆66Updated 5 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆32Updated 4 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆92Updated 4 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆71Updated 2 months ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Create stacked violin plot☆45Updated 2 years ago