francescojm / BAGELRLinks
R implementation of the BAGEL method to call for gene essentiality significance
☆11Updated 7 years ago
Alternatives and similar repositories for BAGELR
Users that are interested in BAGELR are comparing it to the libraries listed below
Sorting:
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
 - Unsupervised correction of gene independent cell responses to CRISPR-cas9☆52Updated 2 years ago
 - R package for benchmarking single cell analysis methods☆32Updated 2 years ago
 - Differential Expression with Capture Efficiency adjustmeNT☆14Updated 2 years ago
 - The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
 - R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
 - An R Package for Geneset Enrichment Workflows☆76Updated last month
 - Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
 - This repository contains HCA Benchmarking codes☆26Updated 5 years ago
 - Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 6 years ago
 - R package of techniques for comparing clusterings of single-cell sequencing data☆40Updated last year
 - Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
 - Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
 - Repository for supplemental material of manuscripts☆18Updated 4 years ago
 - R package for testing and visualizing gene list overlaps☆19Updated 9 years ago
 - Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Updated 6 years ago
 - Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
 - A General Framework for Consensus Partitioning☆63Updated 8 months ago
 - Inference of switch-like differential expression along single-cell trajectories☆21Updated 8 years ago
 - Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 2 months ago
 - An R-based interface for loom files☆67Updated 5 years ago
 - Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
 - ☆15Updated 4 years ago
 - Differential Correlation across Ranked Samples☆12Updated 2 years ago
 - An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
 - Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆46Updated last month
 - R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
 - Exon-Intron Split Analysis (EISA) in R☆16Updated this week
 - HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 6 years ago
 - See: https://www.iscb.org/ismb2018/3511#am1☆18Updated 7 years ago