pbnjay / lollipops
This is the development fork - Stable code has been moved to ==>
☆22Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for lollipops
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆29Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated this week
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated last week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Merge fastq files split over lanes☆19Updated 6 years ago
- ☆29Updated 5 years ago
- A pipeline for differential expression and differential alternative splicing analysis☆61Updated 6 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- An R interface to the MEME Suite☆46Updated last month
- The Zavolab Automated RNA-seq Pipeline☆35Updated 3 weeks ago
- Scripts to import your FeatureCounts output into DEXSeq☆31Updated 6 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆85Updated 3 months ago
- Detecting intron retention from RNA-Seq experiments☆53Updated 4 months ago
- BigWig and BAM utilities☆92Updated 7 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 7 months ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate☆24Updated this week
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆52Updated last year
- ☆47Updated 3 years ago
- ☆23Updated 3 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆41Updated last month
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 2 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆67Updated 2 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆49Updated 2 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆21Updated last week