☆10Jul 16, 2021Updated 4 years ago
Alternatives and similar repositories for CMScaller
Users that are interested in CMScaller are comparing it to the libraries listed below
Sorting:
- ☆31May 16, 2016Updated 9 years ago
- ☆43Feb 9, 2024Updated 2 years ago
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆48Feb 10, 2026Updated 3 weeks ago
- ☆31Jun 12, 2020Updated 5 years ago
- 🌓 Allele specific analyses across cell states and conditions☆10Nov 28, 2022Updated 3 years ago
- ☆13Feb 27, 2026Updated last week
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- ☆12Aug 2, 2020Updated 5 years ago
- A context aware tool for proteasomal cleavage predictions☆15May 30, 2025Updated 9 months ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- R package implementing affinity propagation clustering along with various utilities☆12Sep 9, 2025Updated 6 months ago
- ☆10Sep 26, 2019Updated 6 years ago
- ☆11Dec 31, 2021Updated 4 years ago
- Collection of fragmentomic analysis scripts☆12Jul 3, 2024Updated last year
- Client to access ExperimentHub resources☆11Oct 30, 2025Updated 4 months ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Feb 26, 2026Updated last week
- A comprehensive platform for population-scale genomic analyses☆10Jul 10, 2023Updated 2 years ago
- Quantitation and visualization of differential alternative splicing events☆11May 2, 2023Updated 2 years ago
- Core utilities for single-cell RNA-seq☆12Apr 13, 2025Updated 10 months ago
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆12Aug 4, 2020Updated 5 years ago
- ☆12Jun 28, 2024Updated last year
- An R package to query EBI's Ontology Lookup Service (OLS)☆11Dec 10, 2025Updated 2 months ago
- ☆14Apr 20, 2023Updated 2 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- R implementation of the BAGEL method to call for gene essentiality significance☆11May 1, 2018Updated 7 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Jul 10, 2019Updated 6 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆17Aug 12, 2022Updated 3 years ago
- ☆11Dec 20, 2024Updated last year
- An API wrapper for snpedia.com in Python/Flask.☆26Feb 5, 2014Updated 12 years ago
- cox loss function and c-index calculation with pytorch☆12Jun 15, 2019Updated 6 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 2 years ago
- python stuff I use☆20Feb 16, 2026Updated 2 weeks ago
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Jun 16, 2021Updated 4 years ago
- ☆63Dec 27, 2023Updated 2 years ago
- Differential expression analysis for single-cell RNA-seq data☆14Feb 15, 2019Updated 7 years ago
- Detect duplicated items framework。内容排重框架。☆12Apr 30, 2015Updated 10 years ago