☆10Jul 16, 2021Updated 5 years ago
Alternatives and similar repositories for CMScaller
Users that are interested in CMScaller are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R package for classification of immune subtypes, in cancer, using gene expression data.☆48Mar 6, 2026Updated 8 months ago
- Example workflows for refine.bio data☆11Jan 14, 2025Updated last year
- ☆37Jun 12, 2020Updated 6 years ago
- Scripts to perform analysis in Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets☆13Dec 5, 2019Updated 6 years ago
- 🌓 Allele specific analyses across cell states and conditions☆11Nov 28, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Molecular Signatures Database as a list☆11Apr 5, 2023Updated 3 years ago
- Bioconductor components for general cancer genomics☆11Feb 5, 2023Updated 3 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 4 years ago
- Single-cell and spatial RNA sequencing identify the age-associated divergent microenvironments and progression patterns in prostate cance…☆11Apr 17, 2025Updated last year
- ☆11Dec 31, 2021Updated 4 years ago
- ☆10Sep 26, 2019Updated 7 years ago
- Immune deconvolution of publicly available TCGA expression data☆11Jan 28, 2019Updated 7 years ago
- The curatedOvarianData package provides data for gene expression analysis in patients with ovarian cancer☆13Nov 5, 2026Updated last week
- Network construction Algorithm☆23Sep 5, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Client to access ExperimentHub resources☆11Aug 19, 2026Updated 2 months ago
- R package implementing affinity propagation clustering along with various utilities☆12Sep 9, 2025Updated last year
- Deconvolve individual immune cell types from cancer data☆10Apr 29, 2017Updated 9 years ago
- Workflow to reproduce results and figures for the second BeatAML manuscript☆18Jun 28, 2022Updated 4 years ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Oct 15, 2019Updated 7 years ago
- R implementation of the BAGEL method to call for gene essentiality significance☆11May 1, 2018Updated 8 years ago
- ☆13Jun 28, 2024Updated 2 years ago
- code for 'Cell Types of Origin of the Cell Free Transcriptome' by Vorperian et al☆21Feb 22, 2022Updated 4 years ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Oct 1, 2024Updated 2 years ago
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- Conta is an R package to detect cross contamination and source of contamination☆11Feb 25, 2020Updated 6 years ago
- Supporting code and materials for GATK gCNV publication☆12Jul 13, 2022Updated 4 years ago
- A comprehensive platform for population-scale genomic analyses☆10Apr 20, 2026Updated 6 months ago
- DUBStepR (Determining the Underlying Basis using Step-wise Regression) is a feature selection algorithm for cell type identification in s…☆12May 26, 2021Updated 5 years ago
- ☆62Dec 27, 2023Updated 2 years ago
- A tool to detect tissue- and cancer- specific epigenetic signatures in WGS data of liquid biopsies☆10Mar 30, 2023Updated 3 years ago
- ☆27Jul 14, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analyses for Manuscript "Sensitive detection of renal cell carcinoma using plasma and urine cell-free DNA methylomes"☆13Aug 4, 2020Updated 6 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆120Apr 2, 2025Updated last year
- ☆13Feb 21, 2025Updated last year
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- Additional code and analysis from the single-cell integration benchmarking project☆76Dec 19, 2022Updated 3 years ago
- Core utilities for single-cell RNA-seq☆13Jun 16, 2026Updated 4 months ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
Are these results useful?