Cell types enrichment analysis
☆215May 27, 2024Updated 2 years ago
Alternatives and similar repositories for xCell
Users that are interested in xCell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆551Aug 3, 2026Updated last month
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆347Jul 28, 2020Updated 6 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆87Jul 12, 2023Updated 3 years ago
- Multi-subject Single Cell Deconvolution☆312Mar 4, 2024Updated 2 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆342Feb 10, 2026Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Inferring CNV from Single-Cell RNA-Seq☆685Nov 14, 2025Updated 10 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆126Apr 26, 2025Updated last year
- AUCell: score single cells with gene regulatory networks☆204Mar 9, 2024Updated 2 years ago
- ☆63Jun 21, 2022Updated 4 years ago
- ☆58Apr 28, 2020Updated 6 years ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 9 months ago
- ☆30Jul 8, 2018Updated 8 years ago
- ☆363Dec 9, 2021Updated 4 years ago
- Doublet detection in single-cell RNA-seq data.☆99Feb 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- NicheNet: predict active ligand-target links between interacting cells☆679Jun 1, 2026Updated 3 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- Clone of the Bioconductor repository for the SingleR package.☆204Sep 10, 2026Updated last week
- Gene set variation analysis☆249Updated this week
- Easy single cell analysis platform for enrichment☆234Aug 9, 2026Updated last month
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 6 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆349Apr 23, 2024Updated 2 years ago
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated last month
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆231Jul 2, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆343Nov 1, 2022Updated 3 years ago
- ☆71Aug 2, 2019Updated 7 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆216Jan 9, 2023Updated 3 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology. https://iobr.github.…☆293Jul 23, 2026Updated last month
- TCR and BCR assembly from RNA-seq data☆362Aug 27, 2026Updated 3 weeks ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆248May 11, 2026Updated 4 months ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆19Jun 16, 2021Updated 5 years ago
- SCDC☆51Jun 20, 2025Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆314Jun 17, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R toolkit for single cell genomics☆2,800Updated this week
- ☆313Nov 10, 2024Updated last year
- Scissor package☆276May 10, 2024Updated 2 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆82Jun 13, 2025Updated last year
- Network Reverse Engineering through AP inference of Mutual Information☆90Mar 6, 2023Updated 3 years ago
- Visualization of Functional Enrichment Result☆260Jun 26, 2026Updated 2 months ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago