dviraran / xCellLinks
Cell types enrichment analysis
☆197Updated last year
Alternatives and similar repositories for xCell
Users that are interested in xCell are comparing it to the libraries listed below
Sorting:
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- A tool for detecting somatic variants in single cell data☆205Updated 8 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆279Updated 2 years ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆193Updated 2 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆163Updated last year
- chromatin Variability Across Regions (of the genome!)☆174Updated 10 months ago
- ☆235Updated 11 months ago
- my notes for scATACseq analysis☆126Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆201Updated last year
- ☆169Updated 3 weeks ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆227Updated 2 years ago
- Clone of the Bioconductor repository for the SingleR package.☆191Updated last week
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆93Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆283Updated 2 years ago
- ☆118Updated 6 years ago
- ☆92Updated 3 weeks ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆297Updated 4 years ago
- Interactively analyze single cell genomic data☆182Updated 3 weeks ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆179Updated 4 years ago
- reticulate-free single cell format conversion☆154Updated 5 months ago
- Clustering scRNAseq by genotypes☆181Updated 6 months ago
- ☆139Updated this week
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆158Updated 2 years ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆287Updated 3 weeks ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆147Updated 4 months ago
- Bench-marking classification tools for scRNA-seq data☆186Updated 2 years ago
- R package to access DoRothEA's regulons☆148Updated last year
- Methods for detecting doublets in single-cell sequencing data☆195Updated 2 months ago