tgen / banovichlab
Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
☆44Updated last year
Alternatives and similar repositories for banovichlab:
Users that are interested in banovichlab are comparing it to the libraries listed below
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- ☆45Updated 5 years ago
- A pipeline for scRNA-seq data analysis☆12Updated last week
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated last year
- ☆16Updated 9 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 5 months ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- ☆59Updated 5 years ago
- scWGCNA☆58Updated 2 years ago
- ☆30Updated last year
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated last year
- ☆18Updated last year
- ☆60Updated 4 years ago
- Functions for single cell data analysis☆31Updated 3 years ago
- ☆53Updated 4 years ago
- Functional Inference of Gene Regulation☆41Updated 8 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆53Updated 2 years ago
- simpler single cell RNAseq data clustering☆40Updated last month
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- Pipeline for characterizing metebolic heterogeneity from single-cell RNA-seq data☆22Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 4 months ago
- ☆47Updated 2 months ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Updated 5 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated 9 months ago
- Mouse cell atlas☆60Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago