dfci / pancanmet_analysis
Software and analysis of metabolism studies across multiple cancer types
☆9Updated 7 years ago
Alternatives and similar repositories for pancanmet_analysis:
Users that are interested in pancanmet_analysis are comparing it to the libraries listed below
- ☆12Updated 5 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- ☆9Updated 7 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- pipelines to process scRNA-seq data☆11Updated 4 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts