dfci / pancanmet_analysis
Software and analysis of metabolism studies across multiple cancer types
☆9Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for pancanmet_analysis
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors☆14Updated 5 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆15Updated 2 years ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆30Updated 3 years ago
- ☆11Updated 5 years ago
- Standalone shiny server container for viewing CellChat object☆12Updated 3 years ago
- ☆9Updated 7 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆13Updated 4 years ago
- bioinformatics R test code☆13Updated 2 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆19Updated 6 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆26Updated last year
- ☆15Updated 3 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- Dichotomous of innate immune landscape☆17Updated 5 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆10Updated last year
- ☆11Updated 6 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆16Updated 4 years ago
- Expedition suite for computing, visualizing, and analyzing single-cell alternative splicing data☆11Updated 7 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Cell type enrichment analysis using gene signatures and cluster markers☆9Updated 6 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆15Updated last year
- ☆29Updated 6 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year