Alternatives and similar repositories for TMEscore

Users that are interested in TMEscore are comparing it to the libraries listed below

• AndersonHu85 / ccRCC_multiomics
  ☆17Updated 2 years ago
• Precancer / SCC
  Immune evasion before tumor invasion in early squamous lung cell carcinogenesis
  ☆16Updated 4 years ago
• YuLab-SMU / tigeR
  🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package
  ☆33Updated 4 months ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• yunshun / HumanBreast10X
  ☆26Updated 3 years ago
• PaulingLiu / metaICB
  ☆22Updated 2 years ago
• miccec / yaGST
  ☆13Updated 7 years ago
• CICAMS-Liu-lab / ECGEA
  ☆16Updated 4 years ago
• gabrielakinker / CCLE_heterogeneity
  ☆59Updated last year
• TheHumphreysLab / Mouse_DKD_Rx_Atlas
  ☆16Updated 3 years ago
• Famingzhao / NEPAL
  Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer
  ☆14Updated 10 months ago
• dengchunyu / TIP
  The source code of web server TIP, including example data.
  ☆19Updated 6 years ago
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆34Updated 4 years ago
• Gibbsdavidl / Immune-Subtype-Clustering
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆18Updated 6 years ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆28Updated 3 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆43Updated last year
• Siliegia / SIGMA
  R package for SIGMA, a clusterability measure for scRNA-seq data
  ☆12Updated 3 years ago
• foreverdream2 / dysfunction_interaction_test
  ☆30Updated 7 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆38Updated 2 years ago
• bei-lab / scRNA-of-NPC
  Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution
  ☆13Updated 2 years ago
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆35Updated 2 years ago
• YangJAT / HCA
  Hierarchical Cell Annotation
  ☆26Updated 11 months ago
• zgyaru / anti-PD1_ESCC
  ☆17Updated 2 years ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆32Updated last year
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆17Updated last year
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated last month
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆34Updated 11 months ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆47Updated last year
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆37Updated 5 years ago