a parallel R package for detecting copy-number alterations from short sequencing reads
☆24Jul 15, 2021Updated 5 years ago
Alternatives and similar repositories for copyCat
Users that are interested in copyCat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆71Aug 22, 2021Updated 5 years ago
- Computes various SV statistics☆13Oct 12, 2023Updated 2 years ago
- This repository contains HCA Benchmarking codes☆27Nov 11, 2019Updated 6 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆20Jul 6, 2026Updated 2 months ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆17Nov 7, 2025Updated 10 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆12Feb 14, 2023Updated 3 years ago
- ☆45Nov 18, 2019Updated 6 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- BISulfite-seq CUI Toolkit☆28Aug 18, 2026Updated last month
- cancereffectsizeR: An R package for calculation of somatic mutation rates and quantification of selection in cancer☆20Updated this week
- Code for creating cell-type-specific regulatory element annotation files☆21Jun 11, 2024Updated 2 years ago
- ☆10May 31, 2022Updated 4 years ago
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast fusion detection using kallisto☆80Jun 11, 2025Updated last year
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- Development repository for the multiMiR database's R API☆25Aug 28, 2024Updated 2 years ago
- ☆14Aug 30, 2025Updated last year
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- ☆12Apr 26, 2020Updated 6 years ago
- Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms☆420May 25, 2026Updated 3 months ago
- Predicting oncogenic potential of gene fusions☆12Feb 13, 2016Updated 10 years ago
- Gene Fusion Visualiser☆53Jan 15, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated last year
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors